View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21612_low_16 (Length: 343)
Name: NF21612_low_16
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 3686306 - 3686632
Alignment:
| Q |
12 |
atgaaacgatgataataataagatagacatgaaac-gatgatat------atggcataaaccatatatagtactaacatagtaagaacaatttagaaaac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3686306 |
atgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaaggcataaaccatatataatactaacatagtaagaacaatttagaaaac |
3686405 |
T |
|
| Q |
105 |
aaaagcacaagatccctttcaaatgatgatacaatgaagaagaagnnnnnnnnnnnnnnn------caactttgttttacgatcttgctatcccccttca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3686406 |
aaaagcacaagatccctttcaaatgatgatacaatgaaaaagaaaaaaagaaaaaaaaaggaaaaacaactttgttttacgatcttgctatcccccttca |
3686505 |
T |
|
| Q |
199 |
tccaattccttcaaattccacttcgttgtttggagaaatacgaccttcatccaaatgcaaaatagggcatgtccggatttcactatgtcggatgatcctg |
298 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3686506 |
tccaattccttcaaattccacttcgctgtttggagaaatacgaccttcatccaaatgcaaaatagggcatgtccggatttcactatgtcggatgatcatg |
3686605 |
T |
|
| Q |
299 |
agtatttaaacttgttttggccacctc |
325 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3686606 |
agtatttaaacttgttttggccacctc |
3686632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
60 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 3650747 - 3650704
Alignment:
| Q |
282 |
tatgtcggatgatcctgagtatttaaacttgttttggccacctc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
3650747 |
tatgtcggatgatcctgagtatttaaacttgttatggcctcctc |
3650704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 3706790 - 3706827
Alignment:
| Q |
282 |
tatgtcggatgatcctgagtatttaaacttgttttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3706790 |
tatgtcggatgatcctgagtatttaaacttgttctggc |
3706827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
76 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
79 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
131 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| |||||||||| |
|
|
| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University