View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_20 (Length: 321)
Name: NF21612_low_20
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 72 - 304
Target Start/End: Original strand, 39471649 - 39471875
Alignment:
| Q |
72 |
tgttagagacttagtccagagaggatcttgtaaaagagactggtatacaaagctccaaaacaacccaaaatctaattgaaaaaagaggtagcctgcaatg |
171 |
Q |
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| T |
39471649 |
tgttagagacttagtccagagaggatcttgtaaaagagactggtatacaaagctccaaaacaacccaaaatctaattgaaaaaagaggtagactgcaatg |
39471748 |
T |
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| Q |
172 |
tctttgtcctacatagtttttaacgatctctatagacacgacatatataaatgataaatgatattgattc-tctttttgggtaaataaatgatactaatt |
270 |
Q |
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| T |
39471749 |
tctttgtcctacatagtttttaacgatctctatagacacgacatat-------ataaatgatattgattcttttttttgggtaaataaatgatactaatt |
39471841 |
T |
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| Q |
271 |
atgtacgctaattcatcctgatcctatataataa |
304 |
Q |
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|||||| |||||||||||| |||||||||||||| |
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| T |
39471842 |
atgtacactaattcatcctaatcctatataataa |
39471875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 39454409 - 39454514
Alignment:
| Q |
202 |
tatagacacgacatatataaatga---taaatgatattgattctctttttgggtaaataaatgatactaattatgtacgctaattcatcctgatcctata |
298 |
Q |
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|||| ||| ||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||| |||||| ||||| ||||||||| || |||||| |
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| T |
39454409 |
tatacacatgacatatataaatgatgataaatgatactgattcttttttttggtaaataaatgatgctaattctgtacactaattcattttgttcctatg |
39454508 |
T |
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| Q |
299 |
taataa |
304 |
Q |
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|||||| |
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| T |
39454509 |
taataa |
39454514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 29310391 - 29310231
Alignment:
| Q |
78 |
agacttagtccagagaggatcttgtaaaagagactggtatacaaagctccaaaacaacccaaaatctaattgaaaaaagaggtagcctgcaatgtctttg |
177 |
Q |
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||||||||||||||| |||||||||||| || ||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
29310391 |
agacttagtccagag--gatcttgtaaaaaagtctggtatacaaagctccaaaataatccaatatctaatataaaaaagaggtagcctgcaatatctttg |
29310294 |
T |
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| Q |
178 |
tcctacatagtttttaacgatctctatagacacgacatatataaatgataaatgatattgatt |
240 |
Q |
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|||||||||||||| | |||| |||||||||| |||||||||||| |||||||||| ||||| |
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| T |
29310293 |
ccctacatagtttttcatgatccctatagacacaacatatataaattataaatgatactgatt |
29310231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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