View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_22 (Length: 317)
Name: NF21612_low_22
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 32 - 301
Target Start/End: Complemental strand, 42096653 - 42096382
Alignment:
| Q |
32 |
tactaacatctacactgctatccccagtcagcataaataatctcactttcaaatcacataatgaaaaagtaataagacgcttggaaattacagcacacat |
131 |
Q |
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| T |
42096653 |
tactaacatctacactgctatccccagtcagcataaataatctcactttcaaatcacataatgaaaaagtaataagacgcttggaaattacagcacacat |
42096554 |
T |
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| Q |
132 |
ctgcagactgcgataattcatttttaccaaatctttcacactttctctatttgttgggtcctaatccaataaaa--acagttagtcaataataatgttgt |
229 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
42096553 |
ctgcagactgcgatgattaatttttaccaaatctttcacactttctctatttgttgggtcctaatccaataaaaacacagttagtcaataataatgtcgt |
42096454 |
T |
|
| Q |
230 |
ggaggcaacattccgcacaaagacatcttattattattttatatatgtttggctgtgttacatgggatatgt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42096453 |
ggaggcaacattccgcacaaagacatcttattattattttatataagtttggctgtgttacatgggatatgt |
42096382 |
T |
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