View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_23 (Length: 307)

Name: NF21612_low_23
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_23
NF21612_low_23
[»] chr1 (5 HSPs)
chr1 (20-290)||(29453530-29453800)
chr1 (27-289)||(29443554-29443825)
chr1 (20-152)||(29423049-29423181)
chr1 (20-272)||(29468006-29468273)
chr1 (196-289)||(29422941-29423034)
[»] chr2 (40 HSPs)
chr2 (20-289)||(9315647-9315935)
chr2 (166-289)||(11987865-11987989)
chr2 (166-289)||(12012927-12013051)
chr2 (24-283)||(9284420-9284703)
chr2 (111-253)||(10371503-10371644)
chr2 (24-103)||(12012779-12012858)
chr2 (123-274)||(9294990-9295144)
chr2 (153-289)||(9320599-9320736)
chr2 (24-100)||(12019118-12019194)
chr2 (122-289)||(9364245-9364409)
chr2 (20-103)||(9291755-9291838)
chr2 (20-103)||(11987713-11987796)
chr2 (111-289)||(10347401-10347571)
chr2 (184-289)||(12019285-12019388)
chr2 (201-289)||(9291566-9291655)
chr2 (23-103)||(9320815-9320895)
chr2 (20-100)||(10335692-10335772)
chr2 (20-103)||(9061385-9061468)
chr2 (153-279)||(9061545-9061675)
chr2 (153-289)||(9328228-9328355)
chr2 (23-103)||(9328432-9328512)
chr2 (237-289)||(12006543-12006595)
chr2 (20-103)||(8573752-8573835)
chr2 (22-103)||(10352942-10353023)
chr2 (204-279)||(9274200-9274276)
chr2 (194-281)||(8573934-8574024)
chr2 (155-268)||(9272296-9272410)
chr2 (20-94)||(10371679-10371753)
chr2 (37-103)||(12006361-12006427)
chr2 (20-100)||(8579731-8579811)
chr2 (20-103)||(10347594-10347680)
chr2 (233-289)||(10352738-10352794)
chr2 (20-103)||(9274333-9274416)
chr2 (21-55)||(7115872-7115906)
chr2 (105-289)||(9065937-9066135)
chr2 (41-97)||(9364467-9364523)
chr2 (35-103)||(10341182-10341250)
chr2 (112-189)||(10335589-10335665)
chr2 (234-278)||(10341038-10341082)
chr2 (234-289)||(19393258-19393318)
[»] scaffold0667 (2 HSPs)
scaffold0667 (155-289)||(4073-4208)
scaffold0667 (38-100)||(4289-4351)
[»] chr3 (1 HSPs)
chr3 (153-289)||(37462098-37462236)
[»] chr8 (2 HSPs)
chr8 (20-103)||(41966934-41967017)
chr8 (119-289)||(41967066-41967236)
[»] chr4 (1 HSPs)
chr4 (233-288)||(26574525-26574580)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 29453530 - 29453800
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29453530 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattat 29453629  T
Q  120 acaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453630 acaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaac 29453729  T
Q  220 tttatgttaaaagcaaattgaattcttattatagaacaaggattctctaattactttgaagtctctaccta 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453730 tttatgttaaaagtaaattgaattcttattatagaacaaggattctctaattactttgaagtctctaccta 29453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 29443554 - 29443825
Alignment:
Q  27 gttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagca 126  Q
    ||||||| |||||||||||||||||   | ||||| || || |||||||||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  29443554 gttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagca 29443653  T
Q  127 agagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgt 226  Q
    |||||||||||| |||||| |||| |||||||||| || ||||||||||||| ||| |||||| || ||||||||||||||||  |||||||||  ||||    
T  29443654 agagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgt 29443753  T
Q  227 taaaag--caaat-------tgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    ||||||  |||||       ||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  29443754 taaaaggtcaaattgaattctgaattcttatcataggacaaggattctctaattattttgaagtctctacct 29443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 29423181 - 29423049
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcat 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| |||||||      
T  29423181 tgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgc 29423082  T
Q  120 acaagcaagagaaggtactccttatttattatc 152  Q
    ||||||||||||||||||| |||||| ||||||    
T  29423081 acaagcaagagaaggtacttcttattgattatc 29423049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 29468006 - 29468273
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcat 119  Q
    |||||| |||| || |||||||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||      
T  29468006 tgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgc 29468105  T
Q  120 acaagcaagagaaggtactccttatttattatctgagttttt---------gctctgtataagttaatttca--gttcaatagatccatcatatgatat- 207  Q
    ||||||||||||||||||| |||||| ||| |||||||||||         | | ||||||||||||| |||  ||| ||| || | ||||||||||||     
T  29468106 acaagcaagagaaggtacttcttattgattgtctgagttttttgagtttttgttatgtataagttaatatcacagtt-aatggacctatcatatgatatg 29468204  T
Q  208 ----atgcagttaaactttatgttaaaag--caaattgaattcttattatagaacaaggattctctaatta 272  Q
        ||||||||||||| |  ||||||||  ||||||||||||||||||||| |||| |||||||||||||    
T  29468205 atatatgcagttaaactct--gttaaaaggtcaaattgaattcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 29423034 - 29422941
Alignment:
Q  196 atcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    ||||||||||||||  ||||||||| |  ||||||||  ||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  29423034 atcatatgatatatctagttaaactct--gttaaaaggtcaaattgaattcttattatatgacaatgattctctaattattttgaagtctctacct 29422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 9315935 - 9315647
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttcccc--------------- 104  Q
    ||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||                    
T  9315935 tgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtaccaccttccttccctgttgattattgtagg 9315836  T
Q  105 aggaaagagaatcatacaagcaaga------gaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatc 198  Q
    | ||| |||||||||||||||||||      |||||||||   ||| |||||| |||||||||||| ||||||||||||| |||||||||| || |||||    
T  9315835 aagaaggagaatcatacaagcaagaacaagagaaggtact---tatatattatttgagtttttgctatgtataagttaatgtcagttcaatggacccatc 9315739  T
Q  199 atatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    |||||||||| | ||||||||| |||| |||| | ||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||    
T  9315738 atatgatataagtagttaaactctatgctaaaggtcaaattgaattcttattataggacaaggattccctaattactttaaattctctacct 9315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 11987865 - 11987989
Alignment:
Q  166 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 264  Q
    ||||||||||||| ||| |||||| || ||||||| ||||||||| ||||||||||||||||||| | |||||||||||| |||||||| |||||||||     
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaaggtcaaattgaattcctattataggacaaggattt 11987964  T
Q  265 tctaattactttgaagtctctacct 289  Q
    |||||||||||||||||||||||||    
T  11987965 tctaattactttgaagtctctacct 11987989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 12012927 - 12013051
Alignment:
Q  166 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 264  Q
    ||||||||||||| ||| |||||| || ||||||||||||||||| ||||| |||  |||||||| | ||||||||||||||||||||| ||||||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgttaaaggtcaaattgaattcttattataggacaaggattc 12013026  T
Q  265 tctaattactttgaagtctctacct 289  Q
    |||||||||||||||||||||||||    
T  12013027 tctaattactttgaagtctctacct 12013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 9284420 - 9284703
Alignment:
Q  24 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc---------------cagga 108  Q
    ||||||| || ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||                | ||    
T  9284420 caagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgccaccttccttccctgttgataattctagtaaga 9284519  T
Q  109 aagagaatcatacaagcaaga------gaaggtac-tccttatttattatctgag-tttttgctctgtataagttaatttcagttcaatagatccatcat 200  Q
    | ||||||| |  ||||||||      |||||||| || ||||| |||||||||| |||||||| ||||||||||||||| |||| ||| || |||||||    
T  9284520 aggagaatcgtttaagcaagagcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcat 9284619  T
Q  201 atgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtct 283  Q
    || || |||| ||||||||||||| ||||| | ||||||||||||||||||| | ||||||| |||| ||||||||||| ||||    
T  9284620 ataatttatgtagttaaactttatattaaaggtcaaattgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 10371644 - 10371503
Alignment:
Q  111 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 210  Q
    ||||||||||||||||||||||||||||  || |||  || ||||||||||| | ||||||||||||| |||||||||| |||||||||||| |||||||    
T  10371644 gagaatcatacaagcaagagaaggtacttattgttt--taactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattatatatg 10371547  T
Q  211 cagttaaactttatgttaaaag-caaattgaattcttattatag 253  Q
    |||||||||| | ||||||| | |||||||||||||||| ||||    
T  10371546 cagttaaactctgtgttaaaggtcaaattgaattcttatcatag 10371503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 12012779 - 12012858
Alignment:
Q  24 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  12012779 caagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 12012858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 9294990 - 9295144
Alignment:
Q  123 agcaagagaaggtactcctt-atttattatctgagttttt-gctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaact 220  Q
    |||||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||| |||| ||| || ||||||||| || ||||  ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  221 ttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattact 274  Q
     |||| |||| | ||||||||||||||||||||| ||| || |||||||||||||    
T  9295090 ctatgctaaaggtcaaattgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 9320736 - 9320599
Alignment:
Q  153 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 251  Q
    |||||||||||| ||||| |||| || ||| |||||| || ||||||||||||||||  ||||||||| |||| || | | ||||||||||| |||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctataggtcaaattgaatttttattat 9320637  T
Q  252 agaacaaggattctctaattactttgaagtctctacct 289  Q
     | |||||||| ||||||||||||||||||||||||||    
T  9320636 cggacaaggatactctaattactttgaagtctctacct 9320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 12019118 - 12019194
Alignment:
Q  24 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 100  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  12019118 caagttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttcctt 12019194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 9364409 - 9364245
Alignment:
Q  122 aagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactt 221  Q
    |||||||||||||||   ||| ||  |||||||||| |||||| |||||||| | || || |||||||  | ||||||||||||||||| | |||||||     
T  9364409 aagcaagagaaggta---cttgttgtttatctgagtctttgctgtgtataagct-atatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  222 tatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    ||| ||||| | ||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  9364313 tatattaaaggtcaaatggaattcttattataggacaaggagtctctaattactttgaagtctatacct 9364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 9291838 - 9291755
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||||||||    
T  9291838 tgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttccttccc 9291755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 11987713 - 11987796
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||| |||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  11987713 tgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 11987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 10347571 - 10347401
Alignment:
Q  111 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 210  Q
    ||||||||| |||||||||||||||||| ||||||  ||| ||||||||||| | |||||||||| || |||||||||| ||   ||||||| |||||||    
T  10347571 gagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatatatg 10347473  T
Q  211 cagttaaactttatgttaaaagcaaattgaattcttattatagaaca-aggattctctaattactttgaagtctctacct 289  Q
    |||||||||| |||        |||||||||||||||| |||| | | || ||| ||||||||||||||||||| |||||    
T  10347472 cagttaaactctat--------caaattgaattcttatcataggatagagtattttctaattactttgaagtctttacct 10347401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 12019285 - 12019388
Alignment:
Q  184 ttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagcaaattgaattcttattatagaacaaggattctctaattactttgaagtct 283  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||     | | ||||||||||||||| |||||||||||||||||||||||||||||    
T  12019285 ttcaatggacccatcatatgatatatgtagttaaactctatgttaatgt--attggaattcttattataggacaaggattctctaattactttgaagtct 12019382  T
Q  284 ctacct 289  Q
    ||||||    
T  12019383 ctacct 12019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 9291655 - 9291566
Alignment:
Q  201 atgatatatgcagttaaactttatgttaaaagc-aaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    |||||| ||| ||||||||| |||| |||| |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9291655 atgatacatgtagttaaactctatgctaaaggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacct 9291566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 9320895 - 9320815
Alignment:
Q  23 acaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||||||| |||||||||||||||| ||||| ||  || |||| ||||||||||||||||||| ||||||||||||||    
T  9320895 acaagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaagtcttgtcccaccttccttccc 9320815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 10335772 - 10335692
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 100  Q
    ||||||| |||||| ||||||||||||||||||||| ||| |  |||||||||||||||||||||||||  ||||||||||    
T  10335772 tgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 9061385 - 9061468
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||||||| ||| |||||||||||| ||  |||||| ||||||    
T  9061385 tgaacaagttagttatgttgaaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatcacctttcttccc 9061468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 9061545 - 9061675
Alignment:
Q  153 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 251  Q
    |||||||||||| |||||||||| || |||||||||| |  ||||||||| ||||||| ||||||||| |||| |||| |  ||||||||||||| ||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgctaaaggttaaattgaattcttgttat 9061642  T
Q  252 agaacaag-----gattctctaattactttgaa 279  Q
    || |||||     ||||||||||||||||||||    
T  9061643 aggacaaggatttgattctctaattactttgaa 9061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 9328355 - 9328228
Alignment:
Q  153 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 251  Q
    |||||||||||| |||||||||| || ||| |||||| || || |||||||||||||| ||||||||| |||| |||| | |||||||||||||||  ||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgctaaaggtcaaattgaattctta--at 9328258  T
Q  252 agaacaaggattctctaattactttgaagtctctacct 289  Q
    ||        ||||||||||||||||||||||||||||    
T  9328257 ag--------ttctctaattactttgaagtctctacct 9328228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 9328512 - 9328432
Alignment:
Q  23 acaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||||||| |||||||||||||||| ||||| || | | |||| ||| ||||||||||||||| ||||||||||||||    
T  9328512 acaagttagttatgttgaaggaattcctgatttccatgatgttatgttttctgttggaagtcttgtaccaccttccttccc 9328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 12006543 - 12006595
Alignment:
Q  237 ttgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacct 12006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 8573752 - 8573835
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||||| |||| ||||||||||||||||||||   ||  ||||||| ||||||||||||||||||| ||||||| ||||||    
T  8573752 tgaacaagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacctttcttccc 8573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 10353023 - 10352942
Alignment:
Q  22 aacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||||||||||| |||| ||| ||||| |||||| ||| |  ||||||||||||||||||||||||| ||||||| ||||||    
T  10353023 aacaagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccaccttacttccc 10352942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 9274276 - 9274200
Alignment:
Q  204 atatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaa 279  Q
    ||||||| |||||||||||||| |||| | ||  ||||||||||||||||| |||||||||| ||||||||||||||    
T  9274276 atatatgtagttaaactttatgctaaaggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 8573934 - 8574024
Alignment:
Q  194 ccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttatta--tagaacaaggattctctaattactttgaagt 281  Q
    |||||||||||||||||  |||||||| |||| |||| | |||||| ||||||||| |  ||| |||||||||||||||||||||||||||    
T  8573934 ccatcatatgatatatgtggttaaactctatgctaaaggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagt 8574024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 9272410 - 9272296
Alignment:
Q  155 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 253  Q
    |||||||||| ||||||||||||| |||||| |||  | |||||||||||| | |||| ||||||   ||| |||| | | |||||||||||||||||||    
T  9272410 agtttttgctatgtataagttaatgtcagtttaatgaacccatcatatgatctttgcaattaaacccaatgctaaaggtctaattgaattcttattatag 9272311  T
Q  254 aacaaggattctcta 268  Q
    ||  |||||||||||    
T  9272310 aaataggattctcta 9272296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 10371753 - 10371679
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccacc 94  Q
    |||||||||||||| ||||||||||| | ||||||| ||| | |||||| |||||||||| |||||||| |||||    
T  10371753 tgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc 10371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 12006361 - 12006427
Alignment:
Q  37 ttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||| |||||||| ||||||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  12006361 ttgagggaattccaaatttcgatgaagcgatgatttgtgttggaagtcttgtactgccttccttccc 12006427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 8579731 - 8579811
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 100  Q
    |||| |||||| ||||||| ||||||||||||||||| || || ||||||||| ||||||||  ||| | |||||||||||    
T  8579731 tgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctaccaccttcctt 8579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 10347680 - 10347594
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcct---aatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||| |||||| ||||||||||||||||   ||| |  || || ||||| ||||||||||||||||||| ||||||||||||||    
T  10347680 tgaacaaattagttatgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttccttccc 10347594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 10352794 - 10352738
Alignment:
Q  233 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| |||||    
T  10352794 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacct 10352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 9274416 - 9274333
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||||||||||||| |||| ||||||||||||| ||| ||  | |||| ||||| ||||||||| |||| ||||| ||||||||    
T  9274416 tgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccaccctccttccc 9274333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 7115872 - 7115906
Alignment:
Q  21 gaacaagttagttgtgttgaaggaattcctaattt 55  Q
    |||||||||||||||||||||||||||||||||||    
T  7115872 gaacaagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 289
Target Start/End: Original strand, 9065937 - 9066135
Alignment:
Q  105 aggaaagagaatcatacaagcaagagaaggtactccttatttattatctgagtttt-------tgctctgtataagttaatttcagttcaatagatcca- 196  Q
    ||||| |||||||  |||| |||||||||||||| |||||||||| ||| ||||||       |||| |||| |||||||| |||||||||| || |||     
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggacccaa 9066036  T
Q  197 -------tcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 288  Q
           |||||||||||||| || ||||||||  | | || | ||||||||| |||||| |||| | || |||||||||||||||||||||| ||||||    
T  9066037 tgacccatcatatgatatatgtagctaaacttt--gctcaaggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacc 9066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 9364523 - 9364467
Alignment:
Q  41 aggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttc 97  Q
    ||||||||||||| |  || ||||||||||||||||||| |||||||| ||||||||    
T  9364523 aggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttc 9364467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 10341250 - 10341182
Alignment:
Q  35 tgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    |||||||||||||||| |||| ||| | |||||||| |||||||||||| | || ||||||| ||||||    
T  10341250 tgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtaccacctttcttccc 10341182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 10335665 - 10335589
Alignment:
Q  112 agaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaat 189  Q
    |||||| |||||||||| ||||||||| ||||||  ||  ||||||||||| | |||||||||| || ||||||||||    
T  10335665 agaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaat 10335589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 10341082 - 10341038
Alignment:
Q  234 aaattgaattcttattatagaacaaggattctctaattactttga 278  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10341082 aaattgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 19393258 - 19393318
Alignment:
Q  234 aaattgaattcttattatagaacaag-----gattctctaattactttgaagtctctacct 289  Q
    |||||||||||||||||||| | |||     ||||||||||||||||||||||||| ||||    
T  19393258 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacct 19393318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 4208 - 4073
Alignment:
Q  155 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 253  Q
    |||||||||| ||||||||||||| || ||||||| || |||||||||||| |||  ||||||||| | || |||||  |||||||||||||||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaactcaaattgaattcttattatag 4109  T
Q  254 aacaaggattctctaattactttgaagtctctacct 289  Q
     | ||||||||| ||||||||||||| |||||||||    
T  4108 gaaaaggattctataattactttgaattctctacct 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 4351 - 4289
Alignment:
Q  38 tgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 100  Q
    ||||| ||||||| ||||| ||  ||||| ||||||||||||||||||||| |||||||||||    
T  4351 tgaagaaattcctgatttcaatggagctaagatttgtgttggaagtcttgtaccaccttcctt 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 37462236 - 37462098
Alignment:
Q  153 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttatta 250  Q
    |||||||||| | ||||||||||  | | |||||| | || ||||||||||||||||| ||||||  | |||| ||||||  |||||||||||||| |||    
T  37462236 tgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta 37462137  T
Q  251 tagaacaaggattctctaattactttgaagtctctacct 289  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  37462136 taggacaaggattctctaattactttgaagtctctacct 37462098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 41966934 - 41967017
Alignment:
Q  20 tgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 103  Q
    ||||||| ||| || ||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||| ||||||||||||||    
T  41966934 tgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccaccttccttccc 41967017  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 289
Target Start/End: Original strand, 41967066 - 41967236
Alignment:
Q  119 tacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaa 218  Q
    |||||||||||||||||||| ||| || ||||||| || ||||||| |||||| ||||  || ||| |||| || ||||||||  ||| ||| | |||||    
T  41967066 tacaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgttagatt-agtgcaatggacccatcatacaatacatgtacttaaa 41967164  T
Q  219 ctttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 289  Q
    || ||||||||| |  |||||||||||||||||||| | ||  ||||||||||||||| |||| || |||||    
T  41967165 ctctatgttaaaggttaaattgaattcttattataggataactattctctaattacttcgaaggctttacct 41967236  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 26574580 - 26574525
Alignment:
Q  233 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 288  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| ||||    
T  26574580 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

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