View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_24 (Length: 306)

Name: NF21612_low_24
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_24
NF21612_low_24
[»] chr5 (4 HSPs)
chr5 (13-282)||(26351799-26352068)
chr5 (47-114)||(41486272-41486339)
chr5 (222-270)||(36270026-36270075)
chr5 (69-133)||(28334620-28334684)
[»] chr1 (1 HSPs)
chr1 (146-279)||(47543329-47543462)
[»] chr2 (3 HSPs)
chr2 (45-114)||(10850665-10850734)
chr2 (45-114)||(10878179-10878248)
chr2 (209-276)||(43724915-43724982)
[»] chr6 (3 HSPs)
chr6 (92-126)||(22996500-22996534)
chr6 (92-126)||(23791867-23791901)
chr6 (49-126)||(18141915-18141991)
[»] chr7 (1 HSPs)
chr7 (146-197)||(35458417-35458469)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 26352068 - 26351799
Alignment:
Q  13 tcacataattcgtaatttgcgttggtatggtttggggtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26352068 tcacataattcgtaatttgcgttggtatggtttggggtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagcta 26351969  T
Q  113 tcaataaatttttaacaaaaagannnnnnnaactagaatctttaaacaaaacttaaatttattaataatcactaaatttttacattccaatttgagaggt 212  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26351968 tcaataaatttttaacaaaaagatttttttaactagaatctttaaacaaaacttaaatttattaataatcactaaatttttacatcccaatttgagaggt 26351869  T
Q  213 tttcctgcaaaatttatttgttccatcagaggttttcctttctcttttatcgcctactaaacctcttatt 282  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  26351868 tttcctgcaaaatttatttgttccatcagaggtttttctttctcttttatctcgtactaaacctcttatt 26351799  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 41486272 - 41486339
Alignment:
Q  47 gggtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagctatc 114  Q
    ||||||| || || ||||||| |||||||||||||||| || ||| ||||||||| || |||||||||    
T  41486272 gggtataaagattaggtatgcgtcggttcgtagtactagtactatttaattaagtataataagctatc 41486339  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 36270026 - 36270075
Alignment:
Q  222 aaatttatttgttccatcagagg-ttttcctttctcttttatcgcctact 270  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| ||||||    
T  36270026 aaatttatttgctccatcagaggatttttctttctcttttatctcctact 36270075  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 28334620 - 28334684
Alignment:
Q  69 tcggttcgtagtactaatagtatctaattaagtgtagtaagctatcaataaatttttaacaaaaa 133  Q
    ||||||| || ||||| || ||||||||||| | ||||||  ||||||||||||||||| |||||    
T  28334620 tcggttcataatactattactatctaattaaatatagtaaattatcaataaatttttaagaaaaa 28334684  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 47543329 - 47543462
Alignment:
Q  146 tagaatctttaaacaaaacttaaatt-tattaataatcactaaatttttacattccaatttgagaggttttcctgcaaaatttatttgttccatcagagg 244  Q
    |||||| ||||||||||||||||| | ||||| |||| ||||||| ||||||| ||||  | | | ||||||||| ||||||||||| |||||||| |||    
T  47543329 tagaatttttaaacaaaacttaaaatctattagtaattactaaatatttacatcccaacct-atatgttttcctgtaaaatttatttattccatcacagg 47543427  T
Q  245 ttttcctttctcttttatcgcctactaaacctctt 279  Q
    |||| ||| ||||| |||| |||||| ||||||||    
T  47543428 tttttcttactcttctatctcctactcaacctctt 47543462  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 10850665 - 10850734
Alignment:
Q  45 tggggtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagctatc 114  Q
    |||||||||||| | ||||| ||||||||||||||||||| || || |||||||||| ||||||||||||    
T  10850665 tggggtatagagctccggtacgcatcggttcgtagtactagtaatacctaattaagtatagtaagctatc 10850734  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 10878179 - 10878248
Alignment:
Q  45 tggggtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagctatc 114  Q
    |||||||||||| | ||||| ||||||||||||||||||| || || |||||||||| ||||||||||||    
T  10878179 tggggtatagagctccggtacgcatcggttcgtagtactagtaatacctaattaagtatagtaagctatc 10878248  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 43724915 - 43724982
Alignment:
Q  209 aggttttcctgcaaaatttatttgttccatcagaggttttcctttctcttttatcgcctactaaacct 276  Q
    ||||||||| |||||| ||||||| | || |||||||||| |||||||||||||  ||||||||||||    
T  43724915 aggttttcccgcaaaaattatttgctacaacagaggtttttctttctcttttatttcctactaaacct 43724982  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 22996534 - 22996500
Alignment:
Q  92 ctaattaagtgtagtaagctatcaataaattttta 126  Q
    |||||||||| ||||||||||||||||||||||||    
T  22996534 ctaattaagtatagtaagctatcaataaattttta 22996500  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 23791867 - 23791901
Alignment:
Q  92 ctaattaagtgtagtaagctatcaataaattttta 126  Q
    |||||||||| ||||||||||||||||||||||||    
T  23791867 ctaattaagtatagtaagctatcaataaattttta 23791901  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 18141991 - 18141915
Alignment:
Q  49 gtatagagtttcggtatgcatcggttcgtagtactaatagtatctaattaagtgtagtaagctatcaataaattttta 126  Q
    |||||||| ||||||| |||||| | ||||| |  |||| || |||||||||| |||||| |||||||||||||||||    
T  18141991 gtatagagcttcggtacgcatcg-tccgtagaatcaatactacctaattaagtatagtaaactatcaataaattttta 18141915  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 35458469 - 35458417
Alignment:
Q  146 tagaatctttaaacaaaactt-aaatttattaataatcactaaatttttacat 197  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||| |||||||    
T  35458469 tagaatttttaaacaaaacttaaaatttattagtaatcacaaaatatttacat 35458417  T

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