View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_25 (Length: 305)

Name: NF21612_low_25
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_25
NF21612_low_25
[»] chr6 (19 HSPs)
chr6 (37-290)||(10579140-10579390)
chr6 (46-284)||(6596283-6596518)
chr6 (203-250)||(6436835-6436882)
chr6 (203-250)||(7993631-7993678)
chr6 (45-125)||(7132143-7132223)
chr6 (205-248)||(6432759-6432802)
chr6 (45-111)||(6423743-6423809)
chr6 (45-121)||(6410532-6410608)
chr6 (205-257)||(9412050-9412102)
chr6 (203-243)||(19633024-19633064)
chr6 (208-247)||(6410627-6410666)
chr6 (204-235)||(6423833-6423864)
chr6 (45-110)||(6403407-6403472)
chr6 (203-248)||(6403502-6403547)
chr6 (51-104)||(6427025-6427078)
chr6 (205-250)||(7132234-7132279)
chr6 (205-250)||(7135157-7135202)
chr6 (205-250)||(7138080-7138125)
chr6 (45-97)||(6594124-6594176)
[»] chr5 (1 HSPs)
chr5 (208-256)||(17205662-17205710)
[»] chr1 (3 HSPs)
chr1 (204-252)||(30827723-30827771)
chr1 (205-257)||(7555124-7555176)
chr1 (203-246)||(33161122-33161165)
[»] chr4 (1 HSPs)
chr4 (210-247)||(10633967-10634004)
[»] chr8 (1 HSPs)
chr8 (211-254)||(32151900-32151943)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 10579390 - 10579140
Alignment:
Q  37 gtgttgtaaagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaaccgacgttttg 136  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10579390 gtgttgtaaagactcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattgttgaccaaccgacgttttg 10579291  T
Q  137 ataacagagagtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatc 236  Q
    |||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579290 ataacagagattgacttcc---attcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatc 10579194  T
Q  237 ggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaact 290  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  10579193 ggcaacgagtaacaagtcatttttgtagagaaagtcagtagaacaagtgaaact 10579140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 6596518 - 6596283
Alignment:
Q  46 agattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaaccgacgttttgataacagag 145  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  6596518 agattcaaatgttgaataaatcgacaatttgataacagagagtgaatttcgttaatgaaatcagttcgattgttgaccaactgacgttttgataacagag 6596419  T
Q  146 agtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaatgag 245  Q
    ||||| |   ||||||||||||| ||||||||| || || |||||||  | ||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  6596418 agtgagt---tccattcttgaaattagtttgacattggaaaatagggttattgatttcgatgttgagttctttgagcaatgggaaacaatcagcaatgag 6596322  T
Q  246 taacaagtcatttttgtataggaagtcagtagaacaagt 284  Q
    |||||||||||||||||| || ||||   ||||||||||    
T  6596321 taacaagtcatttttgtagagaaagtttatagaacaagt 6596283  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 6436835 - 6436882
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 250  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6436835 cgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 7993678 - 7993631
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 250  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  7993678 cgaggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 7132143 - 7132223
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaa 125  Q
    ||||||||||||||| |||||| | ||||| ||||||| | ||||||||||||||||||| | |||| |||| || |||||    
T  7132143 aagattcaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagttagtttgattgttcaccaa 7132223  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 6432759 - 6432802
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 248  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  6432759 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaa 6432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 6423743 - 6423809
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagtt 111  Q
    ||||||||||||||| |||||| ||||||| ||||||| |  | |||||||||||||||||| ||||    
T  6423743 aagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatgaaattagtt 6423809  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 6410532 - 6410608
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttga 121  Q
    ||||| || |||||| | |||| | ||||| ||||||||| ||||||||||||||||||||| || ||||| |||||    
T  6410532 aagatccatatgttgtaaacattggcacttggataacagatagtgaattccattaatgaaattagatcgatacttga 6410608  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 9412050 - 9412102
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 257  Q
    |||||||||||||  ||||| |||||||| || ||||||||||||||||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcatt 9412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19633024 - 19633064
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatg 243  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  19633024 cgaggttgagttctttcaacaatgggaaacaatcggcaatg 19633064  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 6410627 - 6410666
Alignment:
Q  208 ttgagttctttgagcaatgggaaacaatcggcaatgagta 247  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6410627 ttgagttctttgagcaatgggaaacaatcagcaaagagta 6410666  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 6423833 - 6423864
Alignment:
Q  204 gaggttgagttctttgagcaatgggaaacaat 235  Q
    ||||||||||||||||||||||||||||||||    
T  6423833 gaggttgagttctttgagcaatgggaaacaat 6423864  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 6403407 - 6403472
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagt 110  Q
    ||||| ||||||||| ||||||  |||||| |||||||||||||  ||||||||||| || |||||    
T  6403407 aagatccaaatgttgtatacatctacacttggataacagagagtatattccattaataaagtcagt 6403472  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 6403502 - 6403547
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 248  Q
    |||||||||||| |||||||   |||||||||||||||||||||||    
T  6403502 cgaggttgagttgtttgagcttagggaaacaatcggcaatgagtaa 6403547  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 6427025 - 6427078
Alignment:
Q  51 caaatgttgaatacatggacactttgataacagagagtgaattccattaatgaa 104  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||  |||||||||    
T  6427025 caaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaa 6427078  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7132234 - 7132279
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 250  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  7132234 aggttgagttctttaagcattggaaaacaatcggcaataagtaaca 7132279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7135157 - 7135202
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 250  Q
    ||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  7135157 aggttgagttctttgtgcattggaaaacaatcggcaataagtaaca 7135202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7138080 - 7138125
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 250  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  7138080 aggttgagttctttaagcattggaaaacaatcggcaataagtaaca 7138125  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 6594176 - 6594124
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccat 97  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||  |||||||    
T  6594176 aagattcaaatgttgtatacatcgacacttggataacaaagagtacattccat 6594124  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  208 ttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcat 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 30827723 - 30827771
Alignment:
Q  204 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaag 252  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7555124 - 7555176
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 257  Q
    ||||||||||||| |||||| |||||||| || ||||||||||||||||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 33161122 - 33161165
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagt 246  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||    
T  33161122 cgaggttgagttttttgagcaaagggaaacaatcggcaacgagt 33161165  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 10634004 - 10633967
Alignment:
Q  210 gagttctttgagcaatgggaaacaatcggcaatgagta 247  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10634004 gagttctttgagcaaagggaaacaatcggcaatgagta 10633967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 32151900 - 32151943
Alignment:
Q  211 agttctttgagcaatgggaaacaatcggcaatgagtaacaagtc 254  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

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