View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_27 (Length: 298)
Name: NF21612_low_27
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 17901663 - 17901795
Alignment:
| Q |
93 |
ccttaacagtaagagtgattttcaaaaaagtttgagta-gctactatgatgagaggaatgtttttggac-cccattt-atctagccaaaaattagtaaga |
189 |
Q |
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| T |
17901663 |
ccttaacagtaagagtggttttcaaaaaagtttgagtaagctaatgtgatgagaggaatgtttttggacacccattttatctagccaaaaattagtaaga |
17901762 |
T |
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| Q |
190 |
gcaccatccctaatttgccacactatatttgtt |
222 |
Q |
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| T |
17901763 |
gcaccatccctaatttgccacactatatttgtt |
17901795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 17901648 - 17901567
Alignment:
| Q |
16 |
tctggtaattgagacaacaatttattgtttacgaatctacatgttaatattgctaataaaatcatagcaatcccaaccctta |
97 |
Q |
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| T |
17901648 |
tctggtaattgagacaacaatttattgtttacgaatctacacgttaatattgctaataaaatcatagcaatcccaaccctta |
17901567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 27892827 - 27892896
Alignment:
| Q |
160 |
ccccatttatctagccaaaaattagtaagagcaccatccctaatttgccacactatatttgtttgaaact |
229 |
Q |
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| T |
27892827 |
ccccatttatctaactaaaaattagtacgaagaccatctccaatttgtcacactatatttttttgaaact |
27892896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 24190098 - 24189994
Alignment:
| Q |
127 |
agtagctactatgatgagaggaatgtttttggaccccatttatctagccaaaaattagtaagagcaccatccctaatttgccacactatatttgtttgaa |
226 |
Q |
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| T |
24190098 |
agtagctactgtgattagagatattttgttgaaccccatttatccaaccataaattggtatgaagaccatcctcaatttgccaaactatatttctttgaa |
24189999 |
T |
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| Q |
227 |
acttc |
231 |
Q |
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||||| |
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| T |
24189998 |
acttc |
24189994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 46910631 - 46910525
Alignment:
| Q |
124 |
ttgagtagctactatgatgagaggaatgtttttgga-ccccatttatctagccaaaaattagtaagagcaccatccctaatttgccacactatatttgtt |
222 |
Q |
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| T |
46910631 |
ttgagttgctattgtgatgagagaaatgttgttggatccccatttatcccgccagaaattggtatgaagaccatccccaattttccacactatatttctt |
46910532 |
T |
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| Q |
223 |
tgaaact |
229 |
Q |
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||||||| |
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| T |
46910531 |
tgaaact |
46910525 |
T |
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