View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21612_low_3 (Length: 752)
Name: NF21612_low_3
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 63 - 732
Target Start/End: Complemental strand, 33695641 - 33694969
Alignment:
| Q |
63 |
tcattcttgtattgctttttgactaagaataaattagagagggtgactgaccagt--cnnnnnnngattcgtcgtttctagacttttaaataaaccaata |
160 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33695641 |
tcattcttgtattgatttttgactaagaataaattagagagggtgactgactagtgtcaaaaaaagattcgtcgtttctagacttttaaataaatcaata |
33695542 |
T |
|
| Q |
161 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgtttaccttcattaggatcattatgtaaatcaaattt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33695541 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgttcaccttcattaggatcattatgtaaatcaaattt |
33695442 |
T |
|
| Q |
261 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagaagcaatttaaagaca |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33695441 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagtagcaatttaaagaca |
33695342 |
T |
|
| Q |
361 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgacgaaattgagaggttttattatcactataataatt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33695341 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgatgaaattgagaggttttattatcactataataatt |
33695242 |
T |
|
| Q |
461 |
ttaatgtgcaaagacatcaccattagaaagtttcttgagtttacaaaactaagttatcaccattgagttaaatctcaagtttgagtttagaattgtaacc |
560 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33695241 |
ttaatgtgcaaagacgtcaccattagaaagtttcttgagtttacaaaactaagttatcaccattgagttaaatctcaagtgtgagtttagaattgtaacc |
33695142 |
T |
|
| Q |
561 |
tcaaactacatagtcactttaattaacaa-nnnnnnnnnctctttctcaatatttttaacaaaataatttnnnnnnnntgtgttttaatatttgtcatgc |
659 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33695141 |
tcaaactacatagtcactttaattaacaattttttttttctctttctcaatatttttaacaaaataatttaaaaaaaatgtgttttaatatttgtcatgc |
33695042 |
T |
|
| Q |
660 |
attataattaaagtttaaccagcaatgaatttgtcaaataagaagagttttgaatccttaaacaagtgacaga |
732 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33695041 |
attataattaaagtttaaccagcaatgaatttgtcaaataagaagagttttgaatccttaaacaagtgacaga |
33694969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 35297401 - 35297316
Alignment:
| Q |
228 |
accttcattaggatcattatgtaaatcaaatttgagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaa |
313 |
Q |
| |
|
||||||||| | ||||||||| |||| |||| ||||||||||||||||| | || | |||||||||||| | ||||||| |||||| |
|
|
| T |
35297401 |
accttcatttgaatcattatgaaaattaaatatgagtttatgccaaacccgcatggccttagggcaatcacgcaacatatgtaaaa |
35297316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University