View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_31 (Length: 274)
Name: NF21612_low_31
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 44866444 - 44866649
Alignment:
| Q |
63 |
tgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaacatcgaccgacagtcttagttttagtattttgatgagctg |
162 |
Q |
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| T |
44866444 |
tgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaacatcgaccgacagtcttagttttagtattttgatgagctg |
44866543 |
T |
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| Q |
163 |
ttgatttggcgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatg |
262 |
Q |
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| T |
44866544 |
ttgatttggcgagcaagctaatacataaaattgagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatg |
44866643 |
T |
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| Q |
263 |
atgatg |
268 |
Q |
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|||||| |
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| T |
44866644 |
atgatg |
44866649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 45246993 - 45246821
Alignment:
| Q |
88 |
tgatgccttgacaattagtggtgagtttatgtgaacat-cgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatac |
186 |
Q |
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||||||||||||| ||||||||||||||||||||| || | | |||||||||||||||||||| ||||||||| | || |||| || |||| ||||||| |
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| T |
45246993 |
tgatgccttgacagttagtggtgagtttatgtgaatattcaatcgacagtcttagttttagtactttgatgagtttttaattttgctagcatcctaatac |
45246894 |
T |
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| Q |
187 |
ataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaatt |
259 |
Q |
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| T |
45246893 |
atagaatggagtaacttacttgttgatgatatatatagaaatcttttgggaatagtatcaattccatttaatt |
45246821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 73 - 268
Target Start/End: Complemental strand, 28752305 - 28752109
Alignment:
| Q |
73 |
gatgccgccacagtttgatgccttgacaattagtggtgagttt-atgtgaacatcgaccgacagtcttagttttagtattttgatgagctgttgatttgg |
171 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||||||| | | | |||| |
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| T |
28752305 |
gatgcccccacagtttgatgccttgacaattagtggtaagttttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttgg |
28752206 |
T |
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| Q |
172 |
cgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatgatgatg |
268 |
Q |
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| |||| |||||| ||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||||||||||| |||| ||||| |
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| T |
28752205 |
ctagcatgctaatcaatagaattgagtagctcactaattgatgatttatatagaaatcttttggggatagtaccaattccatttaaatatgttgatg |
28752109 |
T |
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