View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_33 (Length: 269)
Name: NF21612_low_33
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 4708910 - 4708668
Alignment:
| Q |
19 |
aaggcgcctgttccaacacatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgagactccttccgatttggctctgcaccataat |
118 |
Q |
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| T |
4708910 |
aaggcacctgttccaacccatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgagactccttccgatttggctctgcaccataat |
4708811 |
T |
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| Q |
119 |
atactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtttacaatttcagagtaccaccagctagcatg |
218 |
Q |
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| T |
4708810 |
atactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtttacaatttcagagtaccaccagctagcatg |
4708711 |
T |
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| Q |
219 |
tcttgctttgatatcatcagcgtagctgtttttattttcttct |
261 |
Q |
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| T |
4708710 |
tcttgctttgatatcatcagcgtagctgtttttattttcttct |
4708668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 40743733 - 40743935
Alignment:
| Q |
59 |
tcaagttgaagaagtgaagtgcatactgagactccttccgatttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtg |
158 |
Q |
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| T |
40743733 |
tcaagttgaagaagtaaaatgcatactaagacttcttccaatttggctttgcacaataatctactcagtagttttcactcagatggcttccctttttgtg |
40743832 |
T |
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| Q |
159 |
gagcaaggtgatgccatgaaaaccactgtttacaatttcagagtaccaccagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttct |
258 |
Q |
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| T |
40743833 |
gagcaaggtgctgcaatgaaaaccacaatttccagtttcaaaataccaccagcaagcatgtctagcttcgatatcctcagcgtagccatcttcattttct |
40743932 |
T |
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| Q |
259 |
tct |
261 |
Q |
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| T |
40743933 |
tct |
40743935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 397423 - 397494
Alignment:
| Q |
100 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatg |
171 |
Q |
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| T |
397423 |
tttggctgtgcactattatttactctgttgtattcacacaaatggcttctctttttgtcgaacaaggtgatg |
397494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 3803361 - 3803283
Alignment:
| Q |
100 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaa |
178 |
Q |
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| T |
3803361 |
tttggctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgcaatgaa |
3803283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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