View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_34 (Length: 263)

Name: NF21612_low_34
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_34
NF21612_low_34
[»] chr8 (8 HSPs)
chr8 (35-247)||(30172607-30172819)
chr8 (182-212)||(5290566-5290596)
chr8 (182-220)||(12972773-12972811)
chr8 (171-225)||(40356783-40356837)
chr8 (176-213)||(6918955-6918992)
chr8 (176-225)||(26717169-26717218)
chr8 (181-225)||(4510940-4510984)
chr8 (184-220)||(6966825-6966861)
[»] chr1 (6 HSPs)
chr1 (186-226)||(4180714-4180754)
chr1 (182-228)||(46712282-46712328)
chr1 (171-221)||(870961-871011)
chr1 (189-222)||(41638432-41638465)
chr1 (185-213)||(42550165-42550193)
chr1 (182-214)||(50764489-50764521)
[»] chr7 (4 HSPs)
chr7 (166-213)||(45078217-45078264)
chr7 (185-228)||(5369807-5369850)
chr7 (171-226)||(39362040-39362095)
chr7 (181-226)||(29574715-29574760)
[»] chr6 (3 HSPs)
chr6 (176-225)||(2732338-2732387)
chr6 (182-220)||(31668800-31668838)
chr6 (181-213)||(3217304-3217336)
[»] chr5 (9 HSPs)
chr5 (185-225)||(34198347-34198387)
chr5 (167-214)||(29365542-29365589)
chr5 (182-220)||(26516215-26516253)
chr5 (171-216)||(6738511-6738556)
chr5 (182-211)||(7096242-7096271)
chr5 (171-216)||(10391274-10391319)
chr5 (181-221)||(1191489-1191529)
chr5 (182-214)||(20982250-20982282)
chr5 (181-220)||(28776891-28776931)
[»] chr4 (5 HSPs)
chr4 (166-225)||(23819002-23819061)
chr4 (181-224)||(28582023-28582066)
chr4 (190-225)||(30207693-30207728)
chr4 (183-220)||(54414866-54414903)
chr4 (181-213)||(43932357-43932389)
[»] chr3 (6 HSPs)
chr3 (181-220)||(28842971-28843010)
chr3 (176-218)||(16790465-16790507)
chr3 (170-216)||(49772771-49772817)
chr3 (182-215)||(33307695-33307728)
chr3 (190-226)||(5407580-5407616)
chr3 (182-214)||(41028966-41028998)
[»] chr2 (4 HSPs)
chr2 (182-229)||(17952816-17952863)
chr2 (171-225)||(10150667-10150721)
chr2 (171-220)||(44606192-44606241)
chr2 (190-222)||(37053509-37053541)
[»] scaffold0654 (1 HSPs)
scaffold0654 (182-220)||(6752-6790)
[»] scaffold0014 (1 HSPs)
scaffold0014 (182-220)||(116671-116709)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 30172607 - 30172819
Alignment:
Q  35 taataacttcttctattatggaagtttcaggtacattaactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcatt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172607 taataacttcttctattatggaagtttcaggtacattaactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcatt 30172706  T
Q  135 accggttttctcggctctggaaaggtgctactttatttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagttt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172707 accggttttctcggctctggaaaggtgctactttatttttattatcaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagttt 30172806  T
Q  235 ataatcgagtttt 247  Q
    |||||||||||||    
T  30172807 ataatcgagtttt 30172819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 5290596 - 5290566
Alignment:
Q  182 aaatagcttatacataagcacttgtatgata 212  Q
    |||||||||||||||||||||||||||||||    
T  5290596 aaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 12972811 - 12972773
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgctta 220  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  12972811 aaatagcttatacataagcacttatatgataaatgctta 12972773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 40356837 - 40356783
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    |||||||||  |||||||||||| |||||||||| ||||| ||||| ||||||||    
T  40356837 ttttattatataaatagcttatagataagcacttatatgacaagtgtttaattaa 40356783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 6918992 - 6918955
Alignment:
Q  176 ttatgaaaatagcttatacataagcacttgtatgataa 213  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6918992 ttataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 26717218 - 26717169
Alignment:
Q  176 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    |||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  26717218 ttataaaattagcttattcagaagcacttatatgataagtgcttaattaa 26717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 4510984 - 4510940
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||    
T  4510984 aaaatagcttataaataagcaattgcatgataagcgcttaattaa 4510940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 6966861 - 6966825
Alignment:
Q  184 atagcttatacataagcacttgtatgataagtgctta 220  Q
    |||||||||||||||||| || |||||||||||||||    
T  6966861 atagcttatacataagcatttatatgataagtgctta 6966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 4180714 - 4180754
Alignment:
Q  186 agcttatacataagcacttgtatgataagtgcttaattaaa 226  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  4180714 agcttatacataagcacttatatgataagtgcttaattaaa 4180754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 46712328 - 46712282
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgcttaattaaatt 228  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  46712328 aaatagcttatacctaagcacttgtgtgataagtgtttaattaaatt 46712282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 871011 - 870961
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaa 221  Q
    |||| |||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  871011 ttttgttataaaaatagtttatacataagcacttatatgataagcgcttaa 870961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 41638432 - 41638465
Alignment:
Q  189 ttatacataagcacttgtatgataagtgcttaat 222  Q
    |||||||||||||||| |||||||||||||||||    
T  41638432 ttatacataagcacttatatgataagtgcttaat 41638465  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 42550193 - 42550165
Alignment:
Q  185 tagcttatacataagcacttgtatgataa 213  Q
    |||||||||||||||||||||||||||||    
T  42550193 tagcttatacataagcacttgtatgataa 42550165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataag 214  Q
    |||||||||||||||||||| ||||||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 45078264 - 45078217
Alignment:
Q  166 tttatttttattatgaaaatagcttatacataagcacttgtatgataa 213  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  45078264 tttatttttgttataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 5369807 - 5369850
Alignment:
Q  185 tagcttatacataagcacttgtatgataagtgcttaattaaatt 228  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  5369807 tagcttatacataagcacttatttgctaagtgcttaattaaatt 5369850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 39362095 - 39362040
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaa 226  Q
    |||||||||||||||||||||||||||||  ||| |   |||||||||||||||||    
T  39362095 ttttattatgaaaatagcttatacataagtgcttatgctataagtgcttaattaaa 39362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 29574715 - 29574760
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataagtgcttaattaaa 226  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||    
T  29574715 aaaatagcttatacataagcatttatatgataaacgcttaattaaa 29574760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 2732338 - 2732387
Alignment:
Q  176 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    |||| |||||||||||||||||| |||||| |||||| ||||||||||||    
T  2732338 ttataaaaatagcttatacataaacacttgcatgataggtgcttaattaa 2732387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 31668800 - 31668838
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgctta 220  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  31668800 aaatagcttatacataagcacttatatgataattgctta 31668838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 3217304 - 3217336
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataa 213  Q
    |||||||||||||||||||||||| ||||||||    
T  3217304 aaaatagcttatacataagcacttatatgataa 3217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 34198387 - 34198347
Alignment:
Q  185 tagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  34198387 tagcttgtacataagcacttatatgataagtgcttaattaa 34198347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 29365589 - 29365542
Alignment:
Q  167 ttatttttattatgaaaatagcttatacataagcacttgtatgataag 214  Q
    |||||||||| || |||||||||||||||| ||||||| |||||||||    
T  29365589 ttatttttatcataaaaatagcttatacatgagcacttatatgataag 29365542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 26516253 - 26516215
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgctta 220  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  26516253 aaatagcttatacataagcacttatatgataagcgctta 26516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 6738511 - 6738556
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 216  Q
    |||||||||  |||||||||||||||||| |||| |||||||||||    
T  6738511 ttttattattgaaatagcttatacataagtacttatatgataagtg 6738556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 7096242 - 7096271
Alignment:
Q  182 aaatagcttatacataagcacttgtatgat 211  Q
    ||||||||||||||||||||||||||||||    
T  7096242 aaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 10391319 - 10391274
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 216  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||||    
T  10391319 ttttgttataaaaatagcttatacgtaagcacttatatgataagtg 10391274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 1191529 - 1191489
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataagtgcttaa 221  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  1191529 aaaaaagcttatacataagcgcttatatgataagtgcttaa 1191489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 20982250 - 20982282
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataag 214  Q
    ||||||||||||||||||||||| |||||||||    
T  20982250 aaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 28776931 - 28776891
Alignment:
Q  181 aaaatagcttatacataagcacttgt-atgataagtgctta 220  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  28776931 aaaatagcttatacataagcacttatcatgataagtgctta 28776891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 23819061 - 23819002
Alignment:
Q  166 tttatttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    ||||| ||| ||||| ||||| ||||||||||| |||||||||||||| |||| ||||||    
T  23819061 tttatatttgttatggaaataacttatacataaacacttgtatgataaatgctaaattaa 23819002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 28582023 - 28582066
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataagtgcttaatta 224  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||    
T  28582023 aaaatagtttatacataaacacttctatgataagtgcttaatta 28582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 30207693 - 30207728
Alignment:
Q  190 tatacataagcacttgtatgataagtgcttaattaa 225  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30207693 tatacataagcacttatatgataagtgcttaattaa 30207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 54414903 - 54414866
Alignment:
Q  183 aatagcttatacataagcacttgtatgataagtgctta 220  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  54414903 aatagcttatacataagcacttatatgataagcgctta 54414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 43932389 - 43932357
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataa 213  Q
    ||||||| |||||||||||||||||||||||||    
T  43932389 aaaatagtttatacataagcacttgtatgataa 43932357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 28842971 - 28843010
Alignment:
Q  181 aaaatagcttatacataagcacttgtatgataagtgctta 220  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgctta 28843010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 16790465 - 16790507
Alignment:
Q  176 ttatgaaaatagcttatacataagcacttgtatgataagtgct 218  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  16790465 ttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 49772771 - 49772817
Alignment:
Q  170 tttttattatgaaaatagcttatacataagcacttgtatgataagtg 216  Q
    |||||||||  |||||||||||||||||| ||||| |||||||||||    
T  49772771 tttttattacaaaaatagcttatacataaacacttatatgataagtg 49772817  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 33307695 - 33307728
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagt 215  Q
    ||||||||||||||||||||||| ||||||||||    
T  33307695 aaatagcttatacataagcacttatatgataagt 33307728  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 5407580 - 5407616
Alignment:
Q  190 tatacataagcacttgtatgataagtgcttaattaaa 226  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  5407580 tatacataagcacttatataataagtgcttaattaaa 5407616  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 41028966 - 41028998
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataag 214  Q
    ||||||||||||||||||||||| |||||||||    
T  41028966 aaatagcttatacataagcacttatatgataag 41028998  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 17952816 - 17952863
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgcttaattaaattt 229  Q
    |||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  17952816 aaatagcttatatataagctcttatatgataagtgctttattaaattt 17952863  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 10150721 - 10150667
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 225  Q
    |||||||||  ||||| ||||||||||| ||||| ||| ||||||||||||||||    
T  10150721 ttttattatagaaataacttatacataaacacttatataataagtgcttaattaa 10150667  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 44606192 - 44606241
Alignment:
Q  171 ttttattatgaaaatagcttatacataagcacttgtatgataagtgctta 220  Q
    |||| ||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  44606192 ttttgttatgaaaatagcttatacataaacacttatataataagcgctta 44606241  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 37053541 - 37053509
Alignment:
Q  190 tatacataagcacttgtatgataagtgcttaat 222  Q
    ||||||||||||||| |||||||||||||||||    
T  37053541 tatacataagcacttatatgataagtgcttaat 37053509  T

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Target: scaffold0654 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 6752 - 6790
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgctta 220  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  6752 aaatagtttatacataagcacttatatgataagtgctta 6790  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 116671 - 116709
Alignment:
Q  182 aaatagcttatacataagcacttgtatgataagtgctta 220  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  116671 aaatagtttatacataagcacttatatgataagtgctta 116709  T

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