View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_38 (Length: 238)
Name: NF21612_low_38
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 50613641 - 50613840
Alignment:
| Q |
17 |
accatcatagttgcttggtgaaatattgctatgatagtttgtctttgttgtgtagctcctacctaaccttgcttcccttcttgaaccaaacatgtacttc |
116 |
Q |
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| T |
50613641 |
accatcatagttgcttggtgaaatattgctatgataatttgtctttgttgtgtagctcctacctaaccttgcttcccttcttgaaccaaacatgtacttc |
50613740 |
T |
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| Q |
117 |
ttcatgtccattttctatcactatatcaagttttccttcataagcttaaagccaaggtgaatgggattttttagcatatccctttctatatatttgaagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
50613741 |
ttcatgtccattttctatcactatatcaagttttccttcataagcttaaagccaaggtgaatggaattttttggcatatccctttctatatatttaaagg |
50613840 |
T |
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