View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_39 (Length: 235)

Name: NF21612_low_39
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_39
NF21612_low_39
[»] chr2 (3 HSPs)
chr2 (77-214)||(44089182-44089319)
chr2 (77-155)||(27328061-27328139)
chr2 (158-217)||(42808524-42808583)
[»] chr8 (5 HSPs)
chr8 (77-156)||(571212-571291)
chr8 (77-123)||(44099192-44099238)
chr8 (158-218)||(37698562-37698620)
chr8 (184-217)||(27127149-27127182)
chr8 (158-217)||(38952854-38952918)
[»] chr6 (3 HSPs)
chr6 (158-214)||(3106398-3106453)
chr6 (184-218)||(21038333-21038367)
chr6 (184-217)||(2979113-2979146)
[»] chr3 (6 HSPs)
chr3 (158-217)||(41200480-41200539)
chr3 (181-215)||(40502835-40502869)
chr3 (184-217)||(28991657-28991690)
chr3 (184-217)||(45199635-45199668)
chr3 (184-217)||(50462739-50462772)
chr3 (184-216)||(13158875-13158907)
[»] chr4 (4 HSPs)
chr4 (158-217)||(49268746-49268809)
chr4 (184-217)||(6377618-6377651)
chr4 (184-217)||(11509674-11509707)
chr4 (184-217)||(28185583-28185616)
[»] chr7 (2 HSPs)
chr7 (184-217)||(8248430-8248463)
chr7 (184-217)||(45261868-45261901)
[»] chr5 (1 HSPs)
chr5 (184-217)||(10370831-10370864)
[»] chr1 (2 HSPs)
chr1 (184-217)||(26519428-26519461)
chr1 (184-217)||(29580161-29580194)
[»] scaffold0002 (1 HSPs)
scaffold0002 (184-216)||(148081-148113)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 44089319 - 44089182
Alignment:
Q  77 gactatgctagttgctttcaaaaataataacaatataactatgctagctagtgaacaaattccatggacatggtattgagcagagctgtcaaatgggctg 176  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||    
T  44089319 gactatgctagtttctttcaaaaataataacaatataactatgctagctagtgaacaaattgcatggacatggtattgagcaaaggtgtcaaatggcctg 44089220  T
Q  177 gtccggccccgagaggcccgactatataaatgggccag 214  Q
    | ||||||||||||||||||||||||||||||||||||    
T  44089219 gcccggccccgagaggcccgactatataaatgggccag 44089182  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 27328139 - 27328061
Alignment:
Q  77 gactatgctagttgctttcaaaaataataacaatataactatgctagctagtgaacaaattccatggacatggtattga 155  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  27328139 gactatgctagtttctttcaaaaataataacaatataactatgctagctagtgaacaaatttcatggacatgatattga 27328061  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 42808583 - 42808524
Alignment:
Q  158 agagctgtcaaatgggctggtccggccccgagaggcccgactatataaatgggccagccc 217  Q
    |||| |||||||||||| || |||| |||||||||||||| |||| ||||||||||||||    
T  42808583 agaggtgtcaaatgggccggcccgggcccgagaggcccgaatatagaaatgggccagccc 42808524  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 571291 - 571212
Alignment:
Q  77 gactatgctagttgctttcaaaaataataacaatataactatgctagctagtgaacaaattccatggacatggtattgag 156  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  571291 gactatgctagtttctttcaaaaataataataatataactatgctagctagtaaacaaattgcatgggcatggtattgag 571212  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 44099192 - 44099238
Alignment:
Q  77 gactatgctagttgctttcaaaaataataacaatataactatgctag 123  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||    
T  44099192 gactatgctaatttctttcaaaaataataataatataactatgctag 44099238  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 37698620 - 37698562
Alignment:
Q  158 agagctgtcaaatgggctggtccggccccgagaggcccgactatataaatgggccagccca 218  Q
    |||| |||||||||||| || |||||||||||  ||||||||||| |||||||||||||||    
T  37698620 agaggtgtcaaatgggccggcccggccccgag--gcccgactatagaaatgggccagccca 37698562  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 27127182 - 27127149
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  27127182 cccgagaggcccgactatagaaatgggccagccc 27127149  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 38952854 - 38952918
Alignment:
Q  158 agagctgtcaaatgggctggtccggccccg-----agaggcccgactatataaatgggccagccc 217  Q
    |||| ||||||||| ||||||||||||| |     ||||||||||||| ||||||||||||||||    
T  38952854 agaggtgtcaaatgagctggtccggcccgggcccaagaggcccgactacataaatgggccagccc 38952918  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 3106398 - 3106453
Alignment:
Q  158 agagctgtcaaatgggctggtccggccccgagaggcccgactatataaatgggccag 214  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  3106398 agaggtgtcaaatgggctgatccggccc-gagaggcccgactatataaatgggccag 3106453  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 21038333 - 21038367
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccca 218  Q
    ||||||||||||||||||| |||||||||||||||    
T  21038333 cccgagaggcccgactatagaaatgggccagccca 21038367  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 2979146 - 2979113
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  2979146 cccgagaggcccgactatagaaatgggccagccc 2979113  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 41200480 - 41200539
Alignment:
Q  158 agagctgtcaaatgggctggtccggccccgagaggcccgactatataaatgggccagccc 217  Q
    |||| |||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||    
T  41200480 agaggtgtcaaatgggctggtccggccccaagagacccgactacataaatgggtcagccc 41200539  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 40502835 - 40502869
Alignment:
Q  181 ggccccgagaggcccgactatataaatgggccagc 215  Q
    |||||||||||||||||||||| ||||||||||||    
T  40502835 ggccccgagaggcccgactatagaaatgggccagc 40502869  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 28991690 - 28991657
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  28991690 cccgagaggcccgactatagaaatgggccagccc 28991657  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 45199635 - 45199668
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  45199635 cccgagaggcccgactatagaaatgggccagccc 45199668  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 50462739 - 50462772
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  50462739 cccgagaggcccgactatagaaatgggccagccc 50462772  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 13158875 - 13158907
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagcc 216  Q
    ||||||||||||||||||| |||||||||||||    
T  13158875 cccgagaggcccgactatagaaatgggccagcc 13158907  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 49268746 - 49268809
Alignment:
Q  158 agagctgtcaaatgggctggtccggcc----ccgagaggcccgactatataaatgggccagccc 217  Q
    |||| |||||||||||| || ||||||    |||||||||||||||||| ||||||||||||||    
T  49268746 agaggtgtcaaatgggccggcccggcctagcccgagaggcccgactatagaaatgggccagccc 49268809  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 6377651 - 6377618
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  6377651 cccgagaggcccgactatagaaatgggccagccc 6377618  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 11509707 - 11509674
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  11509707 cccgagaggcccgactatagaaatgggccagccc 11509674  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 28185616 - 28185583
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  28185616 cccgagaggcccgactatagaaatgggccagccc 28185583  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 8248463 - 8248430
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  8248463 cccgagaggcccgactatagaaatgggccagccc 8248430  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 45261901 - 45261868
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  45261901 cccgagaggcccgactatagaaatgggccagccc 45261868  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 10370831 - 10370864
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  10370831 cccgagaggcccgactatagaaatgggccagccc 10370864  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 26519428 - 26519461
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  26519428 cccgagaggcccgactatagaaatgggccagccc 26519461  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 29580194 - 29580161
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagccc 217  Q
    ||||||||||||||||||| ||||||||||||||    
T  29580194 cccgagaggcccgactatagaaatgggccagccc 29580161  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 148113 - 148081
Alignment:
Q  184 cccgagaggcccgactatataaatgggccagcc 216  Q
    ||||||||||||||||||| |||||||||||||    
T  148113 cccgagaggcccgactatagaaatgggccagcc 148081  T

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