View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_4 (Length: 695)

Name: NF21612_low_4
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_4
NF21612_low_4
[»] chr1 (4 HSPs)
chr1 (191-688)||(1390281-1390752)
chr1 (28-123)||(1390128-1390223)
chr1 (303-399)||(21859717-21859813)
chr1 (303-398)||(22916284-22916379)
[»] chr6 (3 HSPs)
chr6 (303-466)||(33596362-33596524)
chr6 (303-399)||(14958902-14958998)
chr6 (302-400)||(8877825-8877922)
[»] chr7 (1 HSPs)
chr7 (303-399)||(48629425-48629521)
[»] scaffold0186 (1 HSPs)
scaffold0186 (302-400)||(2723-2821)
[»] chr4 (3 HSPs)
chr4 (312-398)||(4103226-4103312)
chr4 (572-636)||(52477314-52477378)
chr4 (562-624)||(2302234-2302296)
[»] chr3 (2 HSPs)
chr3 (302-398)||(27437912-27438010)
chr3 (302-400)||(9775128-9775225)
[»] chr2 (1 HSPs)
chr2 (303-382)||(27513752-27513831)
[»] chr8 (2 HSPs)
chr8 (303-382)||(15327849-15327928)
chr8 (303-382)||(15508218-15508297)
[»] scaffold0131 (1 HSPs)
scaffold0131 (325-394)||(10296-10365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (306-394)||(111003-111091)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 191 - 688
Target Start/End: Original strand, 1390281 - 1390752
Alignment:
Q  191 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390281 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 1390380  T
Q  291 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||                   
T  1390381 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaacttataactgcctcaaaatgcacat--------------- 1390465  T
Q  391 cgactgtttggagcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctctctacccaaaatttcatttccccg 490  Q
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1390466 -------ttggagcaactgtcgcagcttttctttgttaaatgaattaaaaggcgcgttgcaatttcatttacgctctctatccaaaatttcatttccccg 1390558  T
Q  491 ctttcttactttcccccaaaaaccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 590  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390559 ctttcttactttcccccaaaa-ccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 1390657  T
Q  591 cttcacacacactcgctctcacactcccaacctaacctacacactcttcttgattcagattcttctcactcccaaaccctaacctgcgataatctctg 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390658 cttcacacacactcgctctcacactcccaacctaacctacacac---tcttgattcagattcttctcactcccaaaccctaacctgcgataatctctg 1390752  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 1390128 - 1390223
Alignment:
Q  28 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390128 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 1390223  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 21859813 - 21859717
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 399  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  21859813 cactacaagaaaaactgcattttgcgacacttcatctgcgaaccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 21859717  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 22916284 - 22916379
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 398  Q
    ||||||||||||| |  ||| ||||||||| ||||| ||||||| |||||||||| || |||||| ||||  |||| |||||||||||||||||||    
T  22916284 cactacaagaaaatcatcaatttgcgacacctcatcagcgacccctaccttataactgtctcaaagtgcatttttgaaacggttgttgcgactgtt 22916379  T

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Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 303 - 466
Target Start/End: Complemental strand, 33596524 - 33596362
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttgga 402  Q
    ||||||||||||| | |||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||     
T  33596524 cactacaagaaaatcagcaaattgtgacacttcatctgcgacccctaccttataactgcctcaaaatgaacatttgcaacggttgttgcaactgtttggg 33596425  T
Q  403 gcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctc 466  Q
     ||| |||||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  33596424 tcaactgtcgcaagttttctttgtt-aatgacttaaaaggcgctttgtaatttcatttacgctc 33596362  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 14958902 - 14958998
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 399  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||||||||||||| ||||||    
T  14958902 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacggttgttgcggctgttt 14958998  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 8877825 - 8877922
Alignment:
Q  302 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 400  Q
    ||||||||||||||   | |||||||||||||||||||||||||| | ||||  || |||||| |||||||  |||||||| ||||||||| |||||||    
T  8877825 tcactacaagaaaataaggaaattgcgacacttcatctgcgacccatgccttgcaactgcctc-aaatgcatttttgcaacagttgttgcggctgtttg 8877922  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 48629425 - 48629521
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 399  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  48629425 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 48629521  T

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Target: scaffold0186 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 2821 - 2723
Alignment:
Q  302 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 400  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||| ||||||||| |||||||    
T  2821 tcactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaacagttgttgcggctgtttg 2723  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 4103226 - 4103312
Alignment:
Q  312 aaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||  |||||||| ||||||||| |||||    
T  4103226 aaaaactgcaaattgcgacacttcatctgcgacccttaccttacaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 4103312  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 572 - 636
Target Start/End: Complemental strand, 52477378 - 52477314
Alignment:
Q  572 ttcctcttcctcgttatgccttcacacacactcgctctcacactcccaacctaacctacacactc 636  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||    
T  52477378 ttccttttcctcgttatggcttcacacgctctcgctctcacactcccaacctagcctacacactc 52477314  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 624
Target Start/End: Complemental strand, 2302296 - 2302234
Alignment:
Q  562 tcctcactcgttcctcttcctcgttatgccttcacacacactcgctctcacactcccaaccta 624  Q
    ||||||||| ||| |||||||| |||||||||||  |||| ||||||||||||||||||||||    
T  2302296 tcctcactccttcttcttcctcattatgccttcaatcacagtcgctctcacactcccaaccta 2302234  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 27437912 - 27438010
Alignment:
Q  302 tcactacaagaaaaac--tgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 398  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||  || ||||||||| ||||  |||||||| ||||||||| |||||    
T  27437912 tcactacaagaaaaacactgcaaattgcgacacttcatctgcgatccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 27438010  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 9775128 - 9775225
Alignment:
Q  302 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 400  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||  ||||||||| |||||||    
T  9775128 tcactacaagaaaa-ctgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaatagttgttgcggctgtttg 9775225  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 27513831 - 27513752
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  27513831 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 27513752  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 15327849 - 15327928
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 382  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15327849 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15327928  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 15508218 - 15508297
Alignment:
Q  303 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 382  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15508218 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15508297  T

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Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 10296 - 10365
Alignment:
Q  325 tgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 394  Q
    ||||||||||||| ||||||||||||||||||| ||||||||  ||||  |||||||| |||| ||||||    
T  10296 tgcgacacttcatttgcgacccttaccttataactgcctcaatgtgcaactttgcaacagttgctgcgac 10365  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 111003 - 111091
Alignment:
Q  306 tacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 394  Q
    |||||||||| | |||  |||||||||| ||  ||||||||||||||||||| ||||||||  |||| ||| ||||| |||||||||||    
T  111003 tacaagaaaatcagcattttgcgacactgcaattgcgacccttaccttataactgcctcaatgtgcatattcgcaacagttgttgcgac 111091  T

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