View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21612_low_6 (Length: 620)
Name: NF21612_low_6
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Complemental strand, 36333793 - 36333197
Alignment:
| Q |
18 |
ctccttttttctacaacaaaagaaattatccatatataagttttatttaattaaaagcaaaacagaaagatatacacaaatatttcaaagtgtagaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36333793 |
ctccttttttctacaacaaaagaaattatccatatataagttttatttaattaaaagcaaaacagaaagacatacacaaatatttcaa-gtgtagaacaa |
36333695 |
T |
|
| Q |
118 |
aaatg----gttaagcaaatgagtgagggaaaaatagaaaatttgttaagcatataaaaatgctacacttttaattcaatgaagaacaaaaagatggcat |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333694 |
aaatgcatggttaagcaaatgagtgagggaaaaatagaaaatttgttaagcatataaaaatgctacacttttaattcaatgaagaacaaaaagatggcat |
36333595 |
T |
|
| Q |
214 |
gataatattaaagcgtgctcactgaattttgagaatgttgaagtccatttgaccatttttcagtaggaatgcaatcatcttcaatgtgatatggatagca |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333594 |
gataatattaaagtgtgctcactgaattttgagaatgttgaagtccatttgaccatttttcagtaggaatgcaatcatcttcaatgtgatatggatagca |
36333495 |
T |
|
| Q |
314 |
aaatggatcattttcagccattttttgtgaactgtttctttagacttgtgttagagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333494 |
aaatggatcattttcagccattttttgtgaactgtttctttagacttgtgttagagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatg |
36333395 |
T |
|
| Q |
414 |
agtcactttttaatgtgnnnnnnnnctttgataagtactcaaaagattctcactttgnnnnnnngttagtacaacataatactactagtatcctnnnnnn |
513 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36333394 |
agtcactttttaatgcgaaaaaaaactttgataagtactcaaaagattctcactttgtttttttgttagtacaacataatactactagtatcct--tctc |
36333297 |
T |
|
| Q |
514 |
nnnnnnnnnnnnnatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctg |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333296 |
tctctctctctctatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctg |
36333197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 470
Target Start/End: Original strand, 2629670 - 2629701
Alignment:
| Q |
439 |
ctttgataagtactcaaaagattctcactttg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2629670 |
ctttgataagtactcaaaagattctcactttg |
2629701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 470
Target Start/End: Original strand, 22979591 - 22979622
Alignment:
| Q |
439 |
ctttgataagtactcaaaagattctcactttg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22979591 |
ctttgataagtactcaaaagattctcactttg |
22979622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 470
Target Start/End: Complemental strand, 23808813 - 23808782
Alignment:
| Q |
439 |
ctttgataagtactcaaaagattctcactttg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23808813 |
ctttgataagtactcaaaagattctcactttg |
23808782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University