View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_low_7 (Length: 613)

Name: NF21612_low_7
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_low_7
NF21612_low_7
[»] chr6 (5 HSPs)
chr6 (1-223)||(31046194-31046412)
chr6 (464-591)||(31045993-31046121)
chr6 (168-239)||(31052482-31052553)
chr6 (532-596)||(31070042-31070107)
chr6 (532-594)||(31027149-31027212)
[»] scaffold0018 (1 HSPs)
scaffold0018 (522-595)||(170668-170741)
[»] chr4 (2 HSPs)
chr4 (171-210)||(12154747-12154786)
chr4 (178-246)||(10168595-10168663)
[»] scaffold0202 (1 HSPs)
scaffold0202 (540-586)||(4961-5007)
[»] chr7 (2 HSPs)
chr7 (175-244)||(23331146-23331215)
chr7 (177-217)||(43098104-43098144)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31046412 - 31046194
Alignment:
Q  1 tatgagtaaacaaaccggtaggaagagacaaatcaaattcattcacgataatatgttaaattggagtgtttgaagagaagaagatgaagacgggcgcagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |   |||||    
T  31046412 tatgagtaaacaaaccggtaggaagagacaaatcaaattcattcacgacaatatgttaaattggagtgtgtgaagagaagaagatgaagatg---gcagt 31046316  T
Q  101 gcagtgatttagtgctttggtatttggannnnnnnnccttgaaggttgatgaagataatgnnnnnnntggaaggtagaagatgaagaaaatggaagaaaa 200  Q
    | |||||||||||| ||||||||||| |        ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  31046315 gtagtgatttagtggtttggtatttgaatttcttttccttgaaggttgatgaagataatg-aaaaaatggaaggtagaagatgaagaaaatggaagaaaa 31046217  T
Q  201 attatgtattagtggtttattat 223  Q
    ||||||||| |||||||||||||    
T  31046216 attatgtatcagtggtttattat 31046194  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 591
Target Start/End: Complemental strand, 31046121 - 31045993
Alignment:
Q  464 aaatgcaatcacttgtaatcaataacatcacc-acaatagtgacatgatataaaaccacaacaaccatgtgagattgggtccccaactatgagataatgg 562  Q
    |||||||||||||||||||| |||||||||   |||||| ||||||||||||||||||| |||||    || ||||||||||||||||||||||||||||    
T  31046121 aaatgcaatcacttgtaatccataacatcaaatacaataatgacatgatataaaaccacgacaactgaatgtgattgggtccccaactatgagataatgg 31046022  T
Q  563 gtgatatatactcttattttatagggaaa 591  Q
    |||||||| ||||||||||||||||||||    
T  31046021 gtgatatacactcttattttatagggaaa 31045993  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 31052553 - 31052482
Alignment:
Q  168 tggaaggtagaagatgaagaaaatggaagaaaaattatgtattagtggtttattattaaatttaattgtctt 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| |||||    
T  31052553 tggaaggtagaagatgaagaaaatggaagaaaaattatgtatcagtagtttattgttagatttaatggtctt 31052482  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 532 - 596
Target Start/End: Complemental strand, 31070107 - 31070042
Alignment:
Q  532 tgagattgg-gtccccaactatgagataatgggtgatatatactcttattttatagggaaaccttt 596  Q
    ||||||||| ||||||||||||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  31070107 tgagattggagtccccaactatgacttaattggtgatatacactcttattttataggtaaatcttt 31070042  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 594
Target Start/End: Complemental strand, 31027212 - 31027149
Alignment:
Q  532 tgagattg-ggtccccaactatgagataatgggtgatatatactcttattttatagggaaacct 594  Q
    |||||||| |||||||||||||||   ||| ||||||||| |||||||||||||||| ||||||    
T  31027212 tgagattgtggtccccaactatgactaaattggtgatatacactcttattttataggtaaacct 31027149  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 170668 - 170741
Alignment:
Q  522 aacaaccatgtgagattgggtccccaactatgagataatgggtgatatatactcttattttatagggaaacctt 595  Q
    ||||||| | |||||||||||||||||||||| | ||||  |||||| | |||||||||||||||| |||||||    
T  170668 aacaaccgtatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaacctt 170741  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 12154747 - 12154786
Alignment:
Q  171 aaggtagaagatgaagaaaatggaagaaaaattatgtatt 210  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  12154747 aaggtagaagatgaagaaaaggaaagaaaaattatgtatt 12154786  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 10168595 - 10168663
Alignment:
Q  178 aagatgaagaaaatggaagaaaaattatgtattagtggtttattattaaatttaattgtctttcatgat 246  Q
    ||||||||||||||| ||||||||| |||| || ||||| |||||| | ||| ||| ||||| ||||||    
T  10168595 aagatgaagaaaatgaaagaaaaatcatgtgtttgtggtctattataagattaaatggtcttgcatgat 10168663  T

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Target: scaffold0202 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 586
Target Start/End: Original strand, 4961 - 5007
Alignment:
Q  540 ggtccccaactatgagataatgggtgatatatactcttattttatag 586  Q
    |||||||||||||||| ||||  |||||||| |||||||||||||||    
T  4961 ggtccccaactatgagttaataagtgatatacactcttattttatag 5007  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 23331146 - 23331215
Alignment:
Q  175 tagaagatgaagaaaatggaagaaaaattatgtattagtggtttattattaaatttaattgtctttcatg 244  Q
    |||||| ||||||||| | |||||||||||||| || |||||| | ||||| ||||||| ||||| ||||    
T  23331146 tagaaggtgaagaaaaggaaagaaaaattatgtgttggtggttgactattagatttaatagtcttgcatg 23331215  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 43098104 - 43098144
Alignment:
Q  177 gaagatgaagaaaatggaagaaaaattatgtattagtggtt 217  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  43098104 gaagatgaagaaaatgaaagaaaaattatgtgttggtggtt 43098144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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