View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21612_low_9 (Length: 546)
Name: NF21612_low_9
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_9 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Original strand, 17440906 - 17441426
Alignment:
| Q |
16 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17440906 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
17441005 |
T |
|
| Q |
116 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcctcaactttactagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17441006 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcatcaactttactagc |
17441105 |
T |
|
| Q |
216 |
atcttcaaagttggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggctgggtacctctaacaggaaagtcatcatcaacttct |
315 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
17441106 |
atcttcaaagctggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggtcgggtacctctaacagcaaagtcatcatcaacttct |
17441205 |
T |
|
| Q |
316 |
tcagcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagagttctcccaattccaatatgcatcttcatccactttaa |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17441206 |
tcatcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagaggtctcccaattccaatatgcatcttcatccactttaa |
17441305 |
T |
|
| Q |
416 |
catctctattaatgaaaattttatttgaatcgattccatagactttatagcccttagactttgagctatagcctattaaaattcccttttcagccttttc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
17441306 |
catctctattaatgaaaattttatttgaatcaattccatagactttatagcccttagactttgagctatagcctattaaaattcctttttcagccttttc |
17441405 |
T |
|
| Q |
516 |
atccaatttgcttcatttcac |
536 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
17441406 |
atccaatttgcttcttttcac |
17441426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 34993810 - 34993870
Alignment:
| Q |
367 |
tcaacttgagagttctcccaattccaatatgcatcttcatccactttaacatctctattaa |
427 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
34993810 |
tcaacttgagaagtctcccaattccaataggcatcttcatctacattagcatctctattaa |
34993870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 4875937 - 4875417
Alignment:
| Q |
16 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4875937 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
4875838 |
T |
|
| Q |
116 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcctcaactttactagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4875837 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcatcaactttactagc |
4875738 |
T |
|
| Q |
216 |
atcttcaaagttggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggctgggtacctctaacaggaaagtcatcatcaacttct |
315 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
4875737 |
atcttcaaagctggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggtcgggtacctctaacagcaaagtcatcatcaacttct |
4875638 |
T |
|
| Q |
316 |
tcagcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagagttctcccaattccaatatgcatcttcatccactttaa |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4875637 |
tcatcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagaggtctcccaattccaatatgcatcttcatccactttaa |
4875538 |
T |
|
| Q |
416 |
catctctattaatgaaaattttatttgaatcgattccatagactttatagcccttagactttgagctatagcctattaaaattcccttttcagccttttc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4875537 |
catctctattaatgaaaattttatttgaatcaattccatagactttatagcccttagactttgagctatagcctattaaaattcctttttcagccttttc |
4875438 |
T |
|
| Q |
516 |
atccaatttgcttcatttcac |
536 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
4875437 |
atccaatttgcttcttttcac |
4875417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 30188554 - 30188211
Alignment:
| Q |
16 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
30188554 |
tgttgaacatagcccttgacaacaagcttggccttgtatttgttgatggatccatttgggttcatctttaccctatagacccattgcactcctatgacat |
30188455 |
T |
|
| Q |
116 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcctcaactttactagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30188454 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctcttttatagcctggtaccattcctcaactttactagc |
30188355 |
T |
|
| Q |
216 |
atcttcaaagttggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggctgggtacctctaacaggaaagtcatcatcaacttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
30188354 |
atcttcaaagttggtaggttcaaggacaacactattgcatctttgataaatctctgaaagaggtcgggtacctcttacagcaaagtcatcatcaacttct |
30188255 |
T |
|
| Q |
316 |
tcagcttgatcttcatttgcatcctcgagagaagacaaagttga |
359 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30188254 |
tcatcttgatcttcatttgtatcctcgagagaaggcaaagttga |
30188211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 3061294 - 3060774
Alignment:
| Q |
16 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061294 |
tgttgaacatagcccttgacaacaagtctggccttgtatttgttgatggatccatctgggttcatcttgaccctatagacccatttcactcctatgacat |
3061195 |
T |
|
| Q |
116 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcctcaactttactagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3061194 |
tcttgtctctaggcttgtcaaccagctgccatgtcttgttcttttcaatgttgtccatctcctctttcatagcctggtaccattcatcaactttactagc |
3061095 |
T |
|
| Q |
216 |
atcttcaaagttggtaggttcaaggacagcactattgcatctttgataaatctctgaaagaggctgggtacctctaacaggaaagtcatcatcaacttct |
315 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3061094 |
atcttcaaagctggtaggttcaaagacaacactattgcatctttgataaatctctgaaagaggttgggtacctctaacagcaaagtcatcatcaacttct |
3060995 |
T |
|
| Q |
316 |
tcagcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagagttctcccaattccaatatgcatcttcatccactttaa |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3060994 |
tcatcttgatcttcatttgcatcctcgagagaagacaaagttgaacctctatcaacttgagaggtctcccaattccaatatgcatcttcatccactttaa |
3060895 |
T |
|
| Q |
416 |
catctctattaatgaaaattttatttgaatcgattccatagactttatagcccttagactttgagctatagcctattaaaattcccttttcagccttttc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3060894 |
catctctattaatgaaaattttatttgaatcaattccatagactttatagcccttagactttgagctatagcctattaaaattcctttttcagccttttc |
3060795 |
T |
|
| Q |
516 |
atccaatttgcttcatttcac |
536 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
3060794 |
atccaatttgcttcttttcac |
3060774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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