View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21613_high_10 (Length: 229)
Name: NF21613_high_10
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38176494 - 38176706
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttatgaacctgcctcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38176494 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttatgaacctgcctcgc |
38176593 |
T |
|
| Q |
101 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38176594 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacg |
38176693 |
T |
|
| Q |
201 |
caattgtatcttg |
213 |
Q |
| |
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||||||||||||| |
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| T |
38176694 |
caattgtatcttg |
38176706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1527127 - 1526915
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttatgaacctgcctcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1527127 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttaagaacctgcctcgc |
1527028 |
T |
|
| Q |
101 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1527027 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacg |
1526928 |
T |
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| Q |
201 |
caattgtatcttg |
213 |
Q |
| |
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||||||||||||| |
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| T |
1526927 |
caattgtatcttg |
1526915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 4318973 - 4319162
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttatgaacctgcctcgc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
4318973 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaagttgtagcagcttttatgaacctgcttcgc |
4319072 |
T |
|
| Q |
101 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggt |
190 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4319073 |
tgatctcgaatacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacattacacttcagaaatcccgcggctggt |
4319162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28626608 - 28626823
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat----gaacctgcc |
96 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| || |
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| T |
28626608 |
aagccacaaaatggcatcacgtaatccaactgcttccgcttcttgaggagggagacaaccttcataccaagttgtagcagcttttaattaagaaccttcc |
28626707 |
T |
|
| Q |
97 |
tcgctgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgc |
196 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||| ||| | ||||| |||||||||||||||||| | |||| ||||| | |||||||||||| |
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| T |
28626708 |
acgatgatctcgaatacacatacctgtcccaaaccggttatgtgccctgaagatggctgcatctacgtta-acttcaaaaatcatgttgctggtggctgc |
28626806 |
T |
|
| Q |
197 |
cacgcaattgtatcttg |
213 |
Q |
| |
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|| | || ||||||||| |
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| T |
28626807 |
caggtaactgtatcttg |
28626823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18977440 - 18977615
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttatgaacctgcctcgc |
100 |
Q |
| |
|
|||||||||||| ||||| ||||| || || ||||| |||||||||||| ||||| ||||| ||||||||||||||||| ||||| | | ||| || |
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| T |
18977440 |
aagccacaaaatagcatcacgtaaacccaccgcttcagcttcttgaggaagaggatttccttcgtaccaatttgtagcagcctttataatctggccacga |
18977539 |
T |
|
| Q |
101 |
tgatctcgaacacacatacctgtcccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaa |
176 |
Q |
| |
|
||||||| || ||| |||||| | ||||| | ||||| ||| |||||||||| || || ||||| |||||||||| |
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| T |
18977540 |
tgatctctaatacaaatacctataccaaaactcttctgctcattgaaaatggccgcgtcgacgtttcatttcagaa |
18977615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 34212630 - 34212544
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat |
87 |
Q |
| |
|
|||||||||||| |||| ||||| || || ||||| |||||||||||| ||||| |||| ||||||||||||||||| ||||| |
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| T |
34212630 |
aagccacaaaataacatcacgtaaacccaccgcttcagcttcttgaggaagaggatttcctttgtaccaatttgtagcagcctttat |
34212544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22497897 - 22497983
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat |
87 |
Q |
| |
|
|||||||||||| ||||| ||||| || || ||||| |||||||||||| ||||| ||||| ||||||||||||||||| ||||| |
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| T |
22497897 |
aagccacaaaatagcatcacgtaaacccaccgcttcagcttcttgaggaagaggatttccttcgtaccaatttgtagcagcctttat |
22497983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 46342828 - 46342742
Alignment:
| Q |
1 |
aagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat |
87 |
Q |
| |
|
||||||||| || ||||||||| |||| |||||||| |||||||||| | ||||| ||||| || |||||||||||||||||||| |
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| T |
46342828 |
aagccacaagatagcatcgcgtgatcccactgcttcagcttcttgagaaagaggatttccttcgtatcaatttgtagcagcttttat |
46342742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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