View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21613_high_2 (Length: 549)
Name: NF21613_high_2
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 14 - 530
Target Start/End: Original strand, 42664857 - 42665387
Alignment:
| Q |
14 |
agacgtgaaagaacaaaaactaatgacatcaatgaattgtatagtggtttaatgaaagagtaacaaaaaagaaagaactaaccaactttggccatagagg |
113 |
Q |
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| T |
42664857 |
agacgtgaaagaacaaaaactaatgacatcaatgaattgtatagtggtttaatgaaagagtaacaaaaaagaaagaactaaccaactttggccatagagg |
42664956 |
T |
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| Q |
114 |
taaaatatttcagacttggatccaagtttcatgcacgccatgttt-gttgattgaattaaaacatcaaacgttaaagtgttccctttattgtcttatgag |
212 |
Q |
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| T |
42664957 |
taaaatatttcagacttggatccaagtttcaagcacgccatgttttgttgattgaattaaaacatcaaacgttaaagtgttccctttattgtcttatgag |
42665056 |
T |
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| Q |
213 |
atttttgtctcaactcagatgcaataatttgagaagtgtgaaatgtgaatgtaacacgtaaatagtatcccgagtctaaaggaggggaaatctaggaaga |
312 |
Q |
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| T |
42665057 |
atttttgtctcaactcagatgcaataatttgagaagtgtgaaatgtgaatgtaacacgtaaatagtatcccgagtctaaaggaggggaaatctaggaaga |
42665156 |
T |
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| Q |
313 |
agaataggttgcaactcttacattacatgtggcagttctgttcttgtagtgtagaatgattctctattcaaattgttaccacg------------attta |
400 |
Q |
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| T |
42665157 |
agaataggttgcaactcttacattacatgtggcagttctgttcttgtagtgtagaatgattctctattcaaattgttaccacgatttatttatttattta |
42665256 |
T |
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| Q |
401 |
tttattttcacgttctttgatta-ataannnnnnnaaataaaattaaaaattaaacttaattactatgcattgatgtcgtggaaacttgatattttgaca |
499 |
Q |
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| T |
42665257 |
tttattttcacgttctttgattatttaatttttttaaataaaattaaaaattaaacttaattactatgcattgatgtcgtggaaacttgatcttttaaca |
42665356 |
T |
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| Q |
500 |
aaatattgcaattttgaagcaaatacaatga |
530 |
Q |
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| T |
42665357 |
aaatattgcaattttgaagcaaatacaatga |
42665387 |
T |
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