View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21613_high_3 (Length: 368)
Name: NF21613_high_3
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 36829029 - 36828690
Alignment:
| Q |
19 |
ccatagtgtatattttctccatttatactgccagagcagagtaccgtgttatacaattaacagaagtaccatttttaacatatgcacattcccgacgcca |
118 |
Q |
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| T |
36829029 |
ccatagtgtatattttctccatttatactgccagagcagagtaccgtgttatacaattaacagaagtaccatttttaacatatgcacattcccgacgcca |
36828930 |
T |
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| Q |
119 |
aaagatacaactactcttcggttcatattttacctaataaagaatacctacagataagcttataagtaaaatgagcaagtatagaggtatccaccaccct |
218 |
Q |
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| T |
36828929 |
aaagatacaactactcttcggttcatattttacctaataaagaatacctacagataagcttataagtaaaatgagcaagtatagaggtatccaccaccct |
36828830 |
T |
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| Q |
219 |
tgtgattagatccaaaggtaatcatagttttaacttagaaatttaaagattagatatactttttagtggcattattcagatacaaatacatttagaagaa |
318 |
Q |
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| T |
36828829 |
tgtgattagatccaaaggtaatcatagttttaacttagaaatttaaagattagatatactttttagtggcattattcagagacaaatacatttagaagaa |
36828730 |
T |
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| Q |
319 |
cctgtcctttcaacataacctacttcttcagtgagaatta |
358 |
Q |
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| T |
36828729 |
cctgtcctttcaacataacctacttcttcagtgagaatta |
36828690 |
T |
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