View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21613_high_6 (Length: 259)
Name: NF21613_high_6
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40442531 - 40442771
Alignment:
| Q |
1 |
ggatctgaatatagttgtaaaattaattcataaatcttaccactaactcaatgtaagaactgaatgacaacttttaccaattttgagcgaatggttagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40442531 |
ggatctgaatatagttgtaaaattaattcataaatcttaccactaactcaatgtaagaactgaatgacaacttttaccaattttgagcgaatggttagaa |
40442630 |
T |
|
| Q |
101 |
caaataatatgttaatattcacttgtacttttatccttgtggtatttatatgatttctatgcaaaatagttattgagatattttaatatcaaagtgtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40442631 |
caaataatatgttaatattcacttgtacttttatccttgtggtatttatatgatttctatgcaaaatagttattgagatattttaatatcaaagtgtggt |
40442730 |
T |
|
| Q |
201 |
tatgtgcaaaatgatgcaagctttggcggagaaactccatt |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40442731 |
tatgtgcataatgatgcaagctttggcggagaaactccatt |
40442771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 29445062 - 29444964
Alignment:
| Q |
126 |
tacttttatccttgtggtatttatatgatttctatgcaaaatagttattgagatattttaatatcaaagtgtggttatgtgcaaaatgatgcaagctttg |
225 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||||| | |||||||| | |||||| |||||| | |||||||| |||| | ||||||||| |
|
|
| T |
29445062 |
tacttttatccttgtggta-ttatatga-ttcaatgcaaaatatcttttgagatactataatatagaagtgttgctatgtgcagaatgctacaagctttg |
29444965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 29475248 - 29475196
Alignment:
| Q |
23 |
ttaattcataaatcttaccactaactcaatgtaagaactgaatgacaactttta |
76 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
29475248 |
ttaattcataa-tcttacatctaactcaatgtcagaactgaatgacaattttta |
29475196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University