View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21613_low_10 (Length: 234)
Name: NF21613_low_10
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14433462 - 14433660
Alignment:
| Q |
1 |
ttaaacacattgttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttag |
100 |
Q |
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| T |
14433462 |
ttaaacgcattgttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttag |
14433561 |
T |
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| Q |
101 |
tctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaagg |
199 |
Q |
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| T |
14433562 |
tctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaagg |
14433660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 14443011 - 14443064
Alignment:
| Q |
133 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcag |
186 |
Q |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcag |
14443064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
40 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
108 |
Q |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
40 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
128 |
Q |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
36 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
86 |
Q |
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| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
35 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
84 |
Q |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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