View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21613_low_5 (Length: 306)

Name: NF21613_low_5
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21613_low_5
NF21613_low_5
[»] chr1 (1 HSPs)
chr1 (115-293)||(45066052-45066230)
[»] chr2 (2 HSPs)
chr2 (138-293)||(4472749-4472905)
chr2 (116-239)||(42904913-42905037)
[»] chr7 (3 HSPs)
chr7 (115-276)||(3219885-3220048)
chr7 (168-249)||(2534592-2534673)
chr7 (215-273)||(3756226-3756284)
[»] chr8 (4 HSPs)
chr8 (115-290)||(24248682-24248859)
chr8 (115-203)||(28740123-28740211)
chr8 (141-293)||(5244771-5244924)
chr8 (170-245)||(12691670-12691745)
[»] chr6 (3 HSPs)
chr6 (138-295)||(3293383-3293541)
chr6 (138-240)||(6919034-6919136)
chr6 (174-240)||(4834696-4834762)
[»] scaffold1064 (1 HSPs)
scaffold1064 (132-245)||(455-568)
[»] scaffold0135 (1 HSPs)
scaffold0135 (122-203)||(40097-40177)
[»] chr4 (2 HSPs)
chr4 (122-203)||(9234232-9234312)
chr4 (133-240)||(9236885-9236992)
[»] chr5 (2 HSPs)
chr5 (160-246)||(39003876-39003962)
chr5 (160-220)||(39005760-39005820)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 45066052 - 45066230
Alignment:
Q  115 ctactcctatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataaga 214  Q
    |||||| ||||||| | |||||||||||| ||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  45066052 ctactcatatctaagaaactaaaataatattgaaattcttcattgattcaatataaggttatacaatacttatataggtaaatgcacattcacaataaga 45066151  T
Q  215 caagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgagtcattttgcttctagaa 293  Q
    |||||| | |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  45066152 caagtgcaccctaacatactcaatatcactttctacattagatccttctagattaagatgagtaattttgcttctagaa 45066230  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 293
Target Start/End: Complemental strand, 4472905 - 4472749
Alignment:
Q  138 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| | | ||||||| ||||    
T  4472905 ataatactgaaattcttcgtttattcaatataaggtcatacaatgcttatataggtaaatacactcccacaataagacaagtgcaccataacatattcaa 4472806  T
Q  238 tatcactccctacattagatccttctagattaagatgagtcat-tttgcttctagaa 293  Q
    ||| | || ||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  4472805 tattaatcactacattagatccttctagattaaggtgaatcatctttgcttctagaa 4472749  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 42905037 - 42904913
Alignment:
Q  116 tactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataaga 214  Q
    ||||| ||||||| | |||||| |||||| ||||||||||  || ||||| || |||||||||||||| ||||||||||||||| |||   |||||||||    
T  42905037 tactcttatctaagaaactaaagataataatgaaattctttattgattcattacaaggtcatacaatgtttatataggtaaatgtacatctacaataaga 42904938  T
Q  215 caagtgaatcctaacatactcaata 239  Q
     ||| | | || |||||||||||||    
T  42904937 taagcgcaccccaacatactcaata 42904913  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 3219885 - 3220048
Alignment:
Q  115 ctactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaat-ataaggtcatacaatgcttatataggtaaatgcacactcacaataa 212  Q
    ||||| |||||||| | |||||| |||||||| ||||||||| || ||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3219885 ctacttctatctaagaaactaaagataatactcaaattcttcattaattcatttataaggtcatacaattcttatataggtaaatgcacacccacaataa 3219984  T
Q  213 gacaagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgag 276  Q
    |||||||| | || |||||| ||||||| |||||||||| ||||||||||||||||||| ||||    
T  3219985 gacaagtgtacccaaacatattcaatattactccctacagtagatccttctagattaaggtgag 3220048  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 2534592 - 2534673
Alignment:
Q  168 taaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactcccta 249  Q
    ||||||||||||||||||||||||| |||| || || |||||||||||||||| | ||||||||||||||||| ||||||||    
T  2534592 taaggtcatacaatgcttatataggcaaattcatacccacaataagacaagtgcaccctaacatactcaatattactcccta 2534673  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 3756226 - 3756284
Alignment:
Q  215 caagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagat 273  Q
    |||||| | ||||||||||||||||| |||||| ||||||||||| ||| |||||||||    
T  3756226 caagtgcaccctaacatactcaatattactccccacattagatccatcttgattaagat 3756284  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 24248859 - 24248682
Alignment:
Q  115 ctactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataag 213  Q
    |||||||||||||  | |||||| |||||||||||| | ||| || |||||||||||||||||||||| |||||||||||||| | |||| ||||| |||    
T  24248859 ctactcctatctatgaaactaaagataatactgaaaattttcattgattcaatataaggtcatacaatacttatataggtaaacgaacacccacaacaag 24248760  T
Q  214 acaagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgagtcat-tttgcttcta 290  Q
    ||||||| ||| || |||||||||||| ||||||||||||||||| || ||||||||| ||||| || ||||||||||    
T  24248759 acaagtgcatcataccatactcaatattactccctacattagatcattatagattaaggtgagttatctttgcttcta 24248682  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 28740211 - 28740123
Alignment:
Q  115 ctactcctatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 203  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||  || | ||||||||||||||||| ||||||||||||||||||||    
T  28740211 ctactcctatataagatactaaaataataatgaaattcttcattactttattataaggtcatacaatgtttatataggtaaatgcacac 28740123  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 5244771 - 5244924
Alignment:
Q  141 atactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatat 240  Q
    ||||| ||||| ||| || ||||  |||||||||||||||||  ||| |||||||||  |||| || ||||||| ||||| |  | |||| |||||||||    
T  5244771 atactcaaatttttcattgattcgttataaggtcatacaatgtctatgtaggtaaatatacacccataataagataagtgcacaccaacaaactcaatat 5244870  T
Q  241 cactccctacattagatccttctagattaagatgagtcat-tttgcttctagaa 293  Q
     ||| ||||||||||| ||||||||| |||| |||||| | |||||||||||||    
T  5244871 tacttcctacattagacccttctagaataaggtgagtcgtctttgcttctagaa 5244924  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 12691670 - 12691745
Alignment:
Q  170 aggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactc 245  Q
    ||||||||||||| |||||||||||||| || || | |||||||||||||| | ||||| ||||||||||| ||||    
T  12691670 aggtcatacaatgtttatataggtaaattcatacccgcaataagacaagtgcaccctaatatactcaatattactc 12691745  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 3293383 - 3293541
Alignment:
Q  138 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 237  Q
    |||||||||||||||||| || ||| | ||| ||||||||||||| |||||||| ||||||||||| | |||||||||||||| | | ||||||| | ||    
T  3293383 ataatactgaaattcttcattgatttattatgaggtcatacaatgtttatatagataaatgcacacccgcaataagacaagtgcaccataacatatttaa 3293482  T
Q  238 tatcactccctacattagatccttctagattaagatgagtcat-tttgcttctagaatt 295  Q
    ||| | | | || ||||||||||| || ||||||||||||||| |||||||||||||||    
T  3293483 tattatttcttagattagatccttataaattaagatgagtcatatttgcttctagaatt 3293541  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 6919034 - 6919136
Alignment:
Q  138 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 237  Q
    |||||| ||||||||||| |  ||||| ||||  ||||||||||  || ||||||||||||||||||| ||||||||||||||  || ||||||| ||||    
T  6919034 ataatattgaaattcttcatcgattcattatattgtcatacaatatttttataggtaaatgcacactcccaataagacaagtgggtcataacatattcaa 6919133  T
Q  238 tat 240  Q
    |||    
T  6919134 tat 6919136  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 4834762 - 4834696
Alignment:
Q  174 catacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatat 240  Q
    ||||||||||||||||||    ||||| ||||| ||||||| ||||| | |||||||||||||||||    
T  4834762 catacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatat 4834696  T

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Target: scaffold1064 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 568 - 455
Alignment:
Q  132 actaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacat 231  Q
    |||||||||||| ||||||| ||| ||   ||| ||||||||| |||||||||||||||| ||||| |||||  |||||||||  |||  | ||||||||    
T  568 actaaaataatattgaaatttttcattgtatcattataaggtcttacaatgcttatatagttaaatacacacctacaataagatgagtacaccctaacat 469  T
Q  232 actcaatatcactc 245  Q
    ||||||||| ||||    
T  468 actcaatattactc 455  T

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Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 40177 - 40097
Alignment:
Q  122 tatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 203  Q
    ||||||| | |||||||||| ||||||||| ||| || ||||| ||||||||| | | ||||||||||||||||||||||||    
T  40177 tatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc-tccgatgcttatataggtaaatgcacac 40097  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 9234312 - 9234232
Alignment:
Q  122 tatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 203  Q
    ||||||| | |||||||||| ||||||||| ||| || ||||| ||||||||| | | ||||||||||||||||||||||||    
T  9234312 tatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc-tccgatgcttatataggtaaatgcacac 9234232  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 9236992 - 9236885
Alignment:
Q  133 ctaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacata 232  Q
    ||||||||||| ||||||| ||  ||   ||| ||||||||| |||||||||||||||||||||| |||||  |||||||||  |||  | | |||||||    
T  9236992 ctaaaataatattgaaattttttattgtatcattataaggtcttacaatgcttatataggtaaatacacacctacaataagatgagtacaccttaacata 9236893  T
Q  233 ctcaatat 240  Q
    ||||||||    
T  9236892 ctcaatat 9236885  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 39003962 - 39003876
Alignment:
Q  160 attcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactcc 246  Q
    ||||| ||| |||||||| ||||| |||||| ||||||| |||| ||| |||||||||||| |  |||||||| | ||||| |||||    
T  39003962 attcattatgaggtcatataatgcctatatacgtaaatgtacacccacgataagacaagtgtactctaacatatttaatattactcc 39003876  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 39005820 - 39005760
Alignment:
Q  160 attcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtg 220  Q
    ||||| ||| |||||||| ||||| |||||| ||||||| |||| ||| ||||||||||||    
T  39005820 attcattatgaggtcatataatgcctatatacgtaaatgtacacccacgataagacaagtg 39005760  T

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