View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21613_low_8 (Length: 248)
Name: NF21613_low_8
Description: NF21613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21613_low_8 |
 | |
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| [»] chr7 (5 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
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| [»] chr2 (6 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr8 (7 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 38176193 - 38176377
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176193 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
38176292 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38176293 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaactta-tcttaaagtttgtaaattgttgtaatagtgac |
38176377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 42415426 - 42415273
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||| | || |||| | ||||||||||||||||| | ||||||||||| | ||| | || |
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|
| T |
42415426 |
ttttttgacaaacaaaaactcatattatttcatttctcacaatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctaga |
42415327 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttat |
216 |
Q |
| |
|
| ||||||| || |||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
42415326 |
cgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttat |
42415273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 10486572 - 10486621
Alignment:
| Q |
194 |
gcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatag |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10486572 |
gcttgtctcctaacaaaacttat-cttaaagtttgaaaattgttgtaatag |
10486621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 8177980 - 8178144
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||||||||||| ||||| |||| |||| ||||| | | | | | |||||||||||||||| ||||||| || ||| ||| ||| | ||| |||| |
|
|
| T |
8177980 |
ttttttgaccaacagaaacttatattctttcgttcataatagtagtcgtaatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttga |
8178079 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
| ||||||| || |||| || |||| ||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
8178080 |
ctccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaactta-tcttaaagtttg |
8178144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 38195567 - 38195695
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||| || || ||| | ||| ||| ||||||||||||||| ||| |||||||||| | ||| |
|
|
| T |
38195567 |
aatacaagatggaatcaaattgaacacttggtgactagcatgcaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccagatgaaa |
38195666 |
T |
|
| Q |
212 |
cttattcttaaagtttgtaaattgttgtaa |
241 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| |
|
|
| T |
38195667 |
ctta-tcttaaagtttggaaagtgttgtaa |
38195695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 1527428 - 1527244
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527428 |
ttttttgacaacaaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
1527329 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1527328 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaactta-tcttaaagtttgtaaattgttgtaatagtgac |
1527244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 48798988 - 48799170
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||| | |||| |||||||| |
|
|
| T |
48798988 |
tttttttaccaacaaaaactcat--catttcattcatcacacaatttgaaatacaagatggaatcaaatcatagatttggcgaccaacttgtaatattga |
48799085 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48799086 |
caccctaacgaaactataagcgacaacattcgcttgtcatctaacgaaactt-ttcttaaagtttgtaaattgttgtaatagtgac |
48799170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 53920454 - 53920290
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| ||||| | || ||||||||||||||||||| |||| ||||||||||||| | ||| | || |
|
|
| T |
53920454 |
ttttttgacaaacaaaaactcatgttatttcatttctcacaatagtttcaatacaagatggaatcaaaacaaactcttggtgacgagcattcaatctaga |
53920355 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
| ||||||| || |||||||||||| ||| |||||||| ||||||||||| | |||||||||||| |
|
|
| T |
53920354 |
cgccctagctaacgtatgagcgacaaaattagcttgtcttctaacaaaactca-tcttaaagtttg |
53920290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 25501099 - 25500951
Alignment:
| Q |
79 |
aactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaacta |
178 |
Q |
| |
|
|||| |||| ||||||||||||||| | || |||||||||||||||||||| ||||||| |||||||||| | ||| |||| |||| || |||||| |
|
|
| T |
25501099 |
aacttatattatttcattcatcacaatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaacta |
25501000 |
T |
|
| Q |
179 |
tgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
|| |||||| ||| ||||||||||| ||| || ||| |||||||||||| |
|
|
| T |
25500999 |
tgggcgacacaatttgcttgtctccttacataattta-tcttaaagtttg |
25500951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 1930226 - 1930111
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| ||||| ||| || ||| |||||| |||| ||| || | ||||||| ||||| |
|
|
| T |
1930226 |
aatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatgagtgacataattagcatttctcctagcaaaa |
1930127 |
T |
|
| Q |
212 |
cttattcttaaagtttg |
228 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
1930126 |
cttatt-ttaaagtttg |
1930111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 50509460 - 50509547
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagc |
150 |
Q |
| |
|
|||||| ||||| || |||| |||| ||||||||||||||| | | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50509460 |
tttttttaccaaaaataacttatattatttcattcatcacaatagaggtaatacaagatggaatcaaatcaaagatgtggtgacgagc |
50509547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 4318673 - 4318857
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4318673 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattga |
4318772 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
4318773 |
caccctagcgaaactatgagcgacaacatttacttgtctcctaacaaaactta-tcttaaagtttgtaaatttttgtaatagtgac |
4318857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 63 - 245
Target Start/End: Original strand, 28626307 - 28626488
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28626307 |
tttttttaccaacaaaaactcataccatttcattcatcacacaatttggaatacaaaatggaatcaaatcaaagacttggtgacgagcttgtaatattga |
28626406 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagt |
245 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28626407 |
caccttagcgaaactatgagcgacaacattcgcttgtctcctaacaaaactta-tcttaaagtttgtacattgttgtaatagt |
28626488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 6409757 - 6409573
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
6409757 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaattaaagacttggtgacgagcttgtaatattga |
6409658 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
6409657 |
cactctagcgaaactacgagcgacaatattcgcttctctcctaacaaaactta-tcttaaaatttgtaaattgttgtaatagtgac |
6409573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 34212931 - 34212747
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| | || |||||||||| |||||||||||| || |||| |||| |||||||||||||||||||||| |||||| || | || |||||||| |
|
|
| T |
34212931 |
ttttttgacaaccataaactcatattatttcattcatcgcaaggtttgtaatataagatggaatcaaatcaaagacatggtgaggaacatgtaatattga |
34212832 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||| || || || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
34212831 |
cactcttgctaagctataagcgacaacattcgcttgtctcctaacaaaattta-tcttaaagtttgtgaattgttgtaaaagtgac |
34212747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 31015396 - 31015560
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||| || ||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||||||||||| || | | ||| |
|
|
| T |
31015396 |
tttttttacaaacaaaaactcatattatttcatttctcacaatatagtcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcattcgtga |
31015495 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
|||| | || || ||||| | ||||| ||| ||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
31015496 |
cacctttgctaagctatgggtgacaaaatttgcttgcctcctaacaaaattta-tcttaaagtttg |
31015560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 35581408 - 35581520
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||| ||||||||||||||||||| | || ||||| || | ||| |||||||||| || | | |||||||||||| ||| | |||||| ||||||||| |
|
|
| T |
35581408 |
aatataagatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgc-agagtatgagcgacaatattagtttgtcttctaacaaaa |
35581506 |
T |
|
| Q |
212 |
cttattcttaaagtt |
226 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
35581507 |
ctta-tcttaaagtt |
35581520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 28909650 - 28909796
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatca---tttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatat |
159 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28909650 |
tttttttaccaacaaaaactcatatcatcatttcattcatcacacaatttggaatgcaagatggaatcaaatcaaagacttggtgacgagcttgtaatat |
28909749 |
T |
|
| Q |
160 |
tgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaa |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28909750 |
tgacaccctagcgaaactatgagtgacaacattcgcttgtctcctaa |
28909796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 1100973 - 1101101
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| ||||| ||| | ||| |||||||||||| ||| | |||||||||| ||||| |
|
|
| T |
1100973 |
aatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgactcccctactaaagtatgagcgacaaaatttgattgtctcctagcaaaa |
1101072 |
T |
|
| Q |
212 |
cttattcttaaagtttgtaaattgttgtaa |
241 |
Q |
| |
|
||| ||||||||||||| | ||||||||| |
|
|
| T |
1101073 |
ctt-ttcttaaagtttggatgttgttgtaa |
1101101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 22497596 - 22497780
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||| || |||| ||||||||| ||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
22497596 |
ttttttgacaaacataaactcatattatttcattcatcgcaaggtttgtaatacaagaaggaatcaaatcaaagacacggtgacgagcatgtaatattga |
22497695 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
|||||| || || |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||| |
|
|
| T |
22497696 |
cacccttgctaagttatgagtgacaacattcgcttgtctcctaacaaaactta-tcttaaagtttgtgaattgttgcaaaagtgac |
22497780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 12186968 - 12186853
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || | ||||||| | || || ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
12186968 |
aatacaagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagctatgggcgacggaattcgcttgcctcctaacaaaa |
12186869 |
T |
|
| Q |
212 |
cttattcttaaagtttg |
228 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
12186868 |
ctta-tcttaaagtttg |
12186853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 41732540 - 41732460
Alignment:
| Q |
86 |
atcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacacc |
166 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||| |||||||||||| ||||| |||||||| || ||| |||||||| |
|
|
| T |
41732540 |
atcatttcattcatcgtaatgtttgtaatacaagatgaaatcaaatcaaaaacttgatgacgagcatgcaatcttgacacc |
41732460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 9178875 - 9178931
Alignment:
| Q |
190 |
attcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtga |
247 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| |||||| ||||| |
|
|
| T |
9178875 |
attcgcttgtctcttaacaaaacttatt-ttaaagtttaaaaattattgtaaaagtga |
9178931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 107 - 248
Target Start/End: Original strand, 8618314 - 8618454
Alignment:
| Q |
107 |
tttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaa |
206 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
8618314 |
tttgtaatacaagatggaatcaaatcgaagaaatggtgacgaggatgtaatattgacacccttgctaagctatgagcgacaacattcgcttgtctcctaa |
8618413 |
T |
|
| Q |
207 |
caaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||| |||||| |
|
|
| T |
8618414 |
caaaactta-tcttgaagtttgtgaattgttgtaaaagtgac |
8618454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 31825949 - 31825894
Alignment:
| Q |
9 |
cataggtagatacaagacctgccaagcctgaaaataagaggaaacaattagtcctt |
64 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31825949 |
cataagtagatacaagacctgccaagcctgaaaataagaggaaacaattagtcctt |
31825894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 31385782 - 31385905
Alignment:
| Q |
115 |
acaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaactt |
214 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||| || ||| |||||||||| || ||| |||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
31385782 |
acaagatagaatcaaatcaaactgttgatgacaagcatgtaattttgacaccct-gctaaagtatgagtgacaaaattagcttgtctcctaacaaaactt |
31385880 |
T |
|
| Q |
215 |
attcttaaagtttgtaaattgttgt |
239 |
Q |
| |
|
| |||||||||||||| ||||||| |
|
|
| T |
31385881 |
aatcttaaagtttgtattttgttgt |
31385905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 3665010 - 3664954
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccct |
168 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
3665010 |
aatacaaaatggaaacaaatcaaagacttggtgacgagcgtgtaattttgacaccct |
3664954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 2704027 - 2704084
Alignment:
| Q |
177 |
tatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattg |
235 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2704027 |
tatgagcgacataatttgcttgtctcctaacaaaactta-tcttaaagtttctaaattg |
2704084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34383591 - 34383553
Alignment:
| Q |
20 |
acaagacctgccaagcctgaaaataagaggaaacaatta |
58 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34383591 |
acaagacccgccaagcctgaaaataagaggaaacaatta |
34383553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 15074323 - 15074461
Alignment:
| Q |
89 |
atttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaa |
188 |
Q |
| |
|
||||||||||||||| | | | |||| || || ||||||||||||||| || |||||||| | ||| |||| ||| || | ||||||||||||| |
|
|
| T |
15074323 |
atttcattcatcacaatagtagaaatataaaatagaatcaaatcaaagatatgttgacgagcatacaattttgatgtccttgctatactatgagcgacac |
15074422 |
T |
|
| Q |
189 |
cattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
15074423 |
aatttgcttgtcttctaacaaaactta-tcttaaagtttg |
15074461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 46343114 - 46342945
Alignment:
| Q |
78 |
aaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaact |
177 |
Q |
| |
|
|||||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| ||||||| | | || |||||||||| ||| || || | |
|
|
| T |
46343114 |
aaactcatattatttcattcatagcaaggtttgtaatacaagatgaaatcaaatcaaagatatggtgaccaacatgtaatattgacatccttgctaagat |
46343015 |
T |
|
| Q |
178 |
atgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |
|
|
| T |
46343014 |
atgagcgacaacattcgcttgtctcctaacaaaactta-tcttagagtttgtgaattgttgtaaaagtgac |
46342945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 44585683 - 44585867
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
||||||||| |||| |||||| ||| |||||||||||| || ||||| |||||| |||||||| |||||||| |||||||||| | | || || || | |
|
|
| T |
44585683 |
ttttttgacaaacataaactcgtattatttcattcatcgcaagatttgtaatacatgatggaattaaatcaaaaacttggtgacaaacatgtaacatcaa |
44585782 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatagtgac |
248 |
Q |
| |
|
|||||| || || ||||||||||||||||||| |||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||| |
|
|
| T |
44585783 |
cacccttgctaagctatgagcgacaacattcgtctgtctcctgacaaaactta-tcttaaagtttgtgaatagttataaaagtgac |
44585867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 4816823 - 4816695
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| | ||| ||||| |||| || || ||||| |||||| ||| ||||||||||| ||| || |
|
|
| T |
4816823 |
aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacataa |
4816724 |
T |
|
| Q |
212 |
cttattcttaaagtttgtaaattgttgtaa |
241 |
Q |
| |
|
||| |||||||||||| ||| |||||||| |
|
|
| T |
4816723 |
ttta-tcttaaagtttggaaaatgttgtaa |
4816695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 19023315 - 19023399
Alignment:
| Q |
159 |
ttgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatag |
244 |
Q |
| |
|
||||| ||||||| || ||||||| || | ||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
19023315 |
ttgactccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttat-cttaaagtttgaaaattgttgtaatag |
19023399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 244
Target Start/End: Complemental strand, 5299599 - 5299419
Alignment:
| Q |
63 |
ttttttgaccaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattga |
162 |
Q |
| |
|
|||||| || ||||||||||||||| |||| |||| | | | | | | |||||||||||||||||||| || || ||||||||||| ||| ||| |
|
|
| T |
5299599 |
tttttttacaaacaaaaactcatattattttattccttaaaatagtagcaatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgc |
5299500 |
T |
|
| Q |
163 |
caccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttgtaaattgttgtaatag |
244 |
Q |
| |
|
| |||| || || | ||| ||||| |||||||||||| ||||||||| |||| ||||||||||| |||||||||| |||| |
|
|
| T |
5299499 |
ctcccttgctaagcaatgggcgaccgaattcgcttgtcttctaacaaaatttat-cttaaagtttggaaattgttgttatag |
5299419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 29542319 - 29542188
Alignment:
| Q |
112 |
aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa |
211 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||| | ||| ||||| ||||||| || | ||| |||||| ||| |||||| ||||||||||| |
|
|
| T |
29542319 |
aatacaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaa |
29542220 |
T |
|
| Q |
212 |
cttattcttaaagtttgtaaattgttgtaatag |
244 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| |
|
|
| T |
29542219 |
ttta-tcttaaagtttgaaaattgttgtaatag |
29542188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 15376 - 15223
Alignment:
| Q |
74 |
acaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcga |
173 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | || |||| || ||||||| |||||||| ||||||||||||| | ||| | ||| ||||||| | |
|
|
| T |
15376 |
acaaaaactcatattatttcatttctcacaatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagcta |
15277 |
T |
|
| Q |
174 |
aactatgagcgacaacattcgcttgtctcctaacaaaacttattcttaaagtttg |
228 |
Q |
| |
|
| |||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
15276 |
acgtatgagcgacaaaattagcttgtctcctaacaaaactta-tcttaaagtttg |
15223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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