View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_high_11 (Length: 504)
Name: NF21614_high_11
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_11 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 1426 - 1820
Alignment:
| Q |
1 |
gcagagattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaatttagctaaagccgctataat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1426 |
gcagagattgagagaggatagggttcggttatttttattgtttgaaattttacttgtaaggccaa--gaggatgctgaatttagctaaagccgctataat |
1523 |
T |
|
| Q |
101 |
ccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaagga |
200 |
Q |
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| T |
1524 |
ccaattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaagga |
1623 |
T |
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| Q |
201 |
aatcataaattcaccaacaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaac |
300 |
Q |
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| T |
1624 |
aatcataaattcaccaaaaatgcagagatattttataaagagttaaaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaac |
1723 |
T |
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| Q |
301 |
caagtgaacaccatatatatgcactttt-gttaagatgtgataccatatgaacacgcaaagtgattgtccaaactccaaactattgcaattcacaag |
396 |
Q |
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| T |
1724 |
agaatgcacgccatatatatgcacttttagctaagatgtgataccatttgaacacacaaagtgattgtccaaactccaaactattgcatttcacaag |
1820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 246 - 481
Target Start/End: Original strand, 25269746 - 25269982
Alignment:
| Q |
246 |
aaagacatttaatttgatagggagagtattaaatttgactgagagagtacgtaaccaagtgaacaccatatatatgcactttt-gttaagatgtgatacc |
344 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| || || || |||||||||||||||||| | |||||||||||||| |
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| T |
25269746 |
aaagacatttaatttgatagagagaatattaaatatgactgaaagagtacgtaacaaaatgcacgccatatatatgcacttttagctaagatgtgatacc |
25269845 |
T |
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| Q |
345 |
atatgaacacgcaaagtgattgtccaaactccaaactattgcaattcacaagcactcatataacttcagtctaattaatcttcatcttccatttctacta |
444 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25269846 |
atttgaacacacaaagtgattgtccaaactccaaactattgcatttcacaagcactcatataacttcagtctaataaatcttcatcttccatttctacta |
25269945 |
T |
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| Q |
445 |
tgactaattctatatatgttccattgcaagaagaaga |
481 |
Q |
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|||||| ||||||||||||||||||||| ||||||| |
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| T |
25269946 |
tgactatgtctatatatgttccattgcaacaagaaga |
25269982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 21946 - 21733
Alignment:
| Q |
2 |
cagagattgagaaaggatagggttcggttatttttattgttagaaattttacttgtaaggccaattgaggatgctgaatttagctaaagccgctataatc |
101 |
Q |
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||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
21946 |
cagagattgagaaagactagggttcagttatttttattgtttgaaattttacttgtaaggccaa--gaggatggtgaatttagctaaagccgctataatc |
21849 |
T |
|
| Q |
102 |
caattactcaaaatactgtactactaaaccaagtcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaa |
201 |
Q |
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||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21848 |
caattactcaaaatact-----agtaaaccaaatcactttcaaataccaaacacacccgatacaaactactaaaataaagcaaagcaaaataacaaggaa |
21754 |
T |
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| Q |
202 |
atcataaattcaccaacaatg |
222 |
Q |
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|||||||| |||||||||||| |
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| T |
21753 |
atcataaaatcaccaacaatg |
21733 |
T |
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