View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_high_14 (Length: 456)
Name: NF21614_high_14
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 2564240 - 2564676
Alignment:
| Q |
1 |
tttgatgccaggaagttactctctacagattnnnnnnnctcctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgat |
100 |
Q |
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| T |
2564240 |
tttgatgcaaggaagttactctctacagattaaaaaaacacctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattattgat |
2564339 |
T |
|
| Q |
101 |
ggaatgagctgaattagcatttgatttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatgg |
200 |
Q |
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| T |
2564340 |
ggaatgagctgaatta------------ttattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatgg |
2564427 |
T |
|
| Q |
201 |
tactattcattttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaa |
300 |
Q |
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| T |
2564428 |
tactattcattttctccaaaatcctaaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaa |
2564527 |
T |
|
| Q |
301 |
atcacaggtattttgtacactaatttatgactc-taagacattaagcccatttctttattattttggttcataattattataactaaaaattgaatgtgt |
399 |
Q |
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| T |
2564528 |
atcacaggtattttgtacactaatttatgactcttaagacatttagcccatttctttattattttggttcataattattataactaaaaattgaatgtgt |
2564627 |
T |
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| Q |
400 |
acataacataggtggactacatactaggtaacaatcccatgatgatgtc |
448 |
Q |
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| T |
2564628 |
acataacataggtggactacatactaggtaacaatcccatgaagatgtc |
2564676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 124 - 311
Target Start/End: Original strand, 2574246 - 2574433
Alignment:
| Q |
124 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
223 |
Q |
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||||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
|
| Q |
224 |
ctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
311 |
Q |
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| T |
2574346 |
ttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
2574433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 448
Target Start/End: Original strand, 2574502 - 2574570
Alignment:
| Q |
382 |
actaaaaattgaatgtgtacata--acataggtggactacatactaggtaacaatcccatgatgatgtc |
448 |
Q |
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| T |
2574502 |
actaaaagttgaatgtgtacatattacataggtggactacatactaggaaacaatcccatgaagatgtc |
2574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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