View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_27 (Length: 339)
Name: NF21614_high_27
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_27 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 37960305 - 37960619
Alignment:
| Q |
8 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccag |
107 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37960305 |
agatgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccag |
37960404 |
T |
|
| Q |
108 |
gttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
37960405 |
gttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctttaaatgtcttatcttcttttcgataccaattgaagccga |
37960504 |
T |
|
| Q |
208 |
aacaatcccattttttccaattaactcatctctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960505 |
aacaatcccattttttccaattaactcatctctctttacagccacggtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccg |
37960604 |
T |
|
| Q |
308 |
ctatcacgacaatct |
322 |
Q |
| |
|
||||||||||||||| |
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|
| T |
37960605 |
ctatcacgacaatct |
37960619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 37954496 - 37954613
Alignment:
| Q |
8 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| | | ||||||||||| |
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| T |
37954496 |
agatgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaacagccaaattcggtgaaccagcaatcacattaacagacttaccag |
37954595 |
T |
|
| Q |
108 |
gttttgacatttccctat |
125 |
Q |
| |
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|||||||||||||||||| |
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| T |
37954596 |
gttttgacatttccctat |
37954613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 37907731 - 37907444
Alignment:
| Q |
14 |
actgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttg |
113 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| || ||| ||||| | | ||| ||||| ||||||||||| || || |||||||||||| |
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| T |
37907731 |
actgcatcagatttctttggttttccccacccaaaatcagtctcacaaacatcaagtttaggtgacccagcaaccactacaaatgagttaccaggtttta |
37907632 |
T |
|
| Q |
114 |
acatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaat |
213 |
Q |
| |
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| | |||| ||||||||| ||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| |||| || || || | |||||| |
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|
| T |
37907631 |
ataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcactcttaaaatctcttatcttcttttaaatagcattt---gctgcaacaat |
37907535 |
T |
|
| Q |
214 |
cccattttttccaattaactcatctctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattca |
304 |
Q |
| |
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|||| |||| ||| ||||||| | || |||||| |||| ||||||| |||| ||||||||||||||||| ||| | |||||| |||||| |
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|
| T |
37907534 |
accatctttttcaactaactcacccctttttacaaccacgttataagaggcaacacaatttccaaaataagatttagctaatgaaaattca |
37907444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 37915880 - 37915576
Alignment:
| Q |
18 |
catcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacat |
117 |
Q |
| |
|
|||| |||||||| || || |||||||||||||| || ||||||||| | | ||| || || |||| ||||| | | ||| ||||| |||||| || |
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| T |
37915880 |
catcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattat |
37915781 |
T |
|
| Q |
118 |
ttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatccca |
217 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||| ||||| |||| |||||| |||| |||||||||| ||||||| || ||| ||| || ||| ||| |
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| T |
37915780 |
ttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaatacca |
37915681 |
T |
|
| Q |
218 |
ttttttccaattaactcatctctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgac |
317 |
Q |
| |
|
| |||||||| ||||||| | || |||||| | ||||||||||| |||||||| ||||||||||||||||| | |||||| ||||||| | |||||||| |
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|
| T |
37915680 |
tcttttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgac |
37915581 |
T |
|
| Q |
318 |
aatct |
322 |
Q |
| |
|
||||| |
|
|
| T |
37915580 |
aatct |
37915576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 3784035 - 3783718
Alignment:
| Q |
8 |
agatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccag |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || || || ||||||||| | ||||| ||||| ||||||| | | ||||||||||| |
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|
| T |
3784035 |
agatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcataaacatcaaatttaggtgagccagcaattcctacaacagacttaccag |
3783936 |
T |
|
| Q |
108 |
gttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatga---ctcttaaaatgtcttatcttcttttcaataccaattgaagc |
204 |
Q |
| |
|
||||||| | ||| |||| |||||| || | || || ||||||||||||| | ||||| |||| |||||||||| |||| |||||| ||| ||| |
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|
| T |
3783935 |
gttttgataattcactatgatcagaagtccaccatttaggacctaacaaagcattatcactcttgaaatctcttatcttcctttcgataccatttgcagc |
3783836 |
T |
|
| Q |
205 |
cgaaacaatcccattttttccaattaactcatctctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattca |
304 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||| | ||||||||| ||||| | | | ||||||||||||||||||||| |||| |||||||| | |||| |
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|
| T |
3783835 |
cgcaacaatcccatttgttccaactaactcagccctctttacaaccacaattttactggcaagacaatttccaaaataatttttgggtaatgaaatttca |
3783736 |
T |
|
| Q |
305 |
ccgctatcacgacaatct |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3783735 |
ggactatcacgacaatct |
3783718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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