View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_28 (Length: 338)
Name: NF21614_high_28
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 34873608 - 34873908
Alignment:
| Q |
17 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagca |
114 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34873608 |
agacaatgaaaaatgcatttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagca |
34873707 |
T |
|
| Q |
115 |
accatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggat |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34873708 |
accatcgcaacaaactcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggat |
34873807 |
T |
|
| Q |
215 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatgagnnnnnnngacatagttcttgaaacttgttcttgtacattgttgaatgatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
34873808 |
tgtgcagtggtccttcatgggttgtttggtattcgggaagagggtatgagtttttttgacatagttcttgaagcttgttcgtgtacattgttgaatgatg |
34873907 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
34873908 |
a |
34873908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 34872016 - 34871714
Alignment:
| Q |
17 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagca |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34872016 |
agacaatgaaaaatgcatttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagca |
34871917 |
T |
|
| Q |
115 |
accatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggat |
214 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
34871916 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggat |
34871817 |
T |
|
| Q |
215 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatgagnnnnnnngacatagttcttgaaac--ttgttcttgtacattgttgaatga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34871816 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagtgggtaagagtttttttgacatagttcttgaagcttttgttcttgtacattgttgaatga |
34871717 |
T |
|
| Q |
313 |
tga |
315 |
Q |
| |
|
||| |
|
|
| T |
34871716 |
tga |
34871714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 311
Target Start/End: Complemental strand, 9911247 - 9911036
Alignment:
| Q |
100 |
aaatgatgaaaagcaaccatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttg |
199 |
Q |
| |
|
|||||||||||||||||||| ||| || | |||||||| ||||| ||||| |||| |||| || |||| |||||||||||| ||||| ||||| |||| |
|
|
| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
|
| Q |
200 |
atgagaaaagaggattgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatgagnnnnnnngacatagttcttgaaacttgttcttgta |
299 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
9911147 |
ttgagaaacgagaattgtgtggtggtccttcacgggttgtttggtattcgggaagagggtatgaatttttttgacatagttcttgaagcttggtcttgta |
9911048 |
T |
|
| Q |
300 |
cattgttgaatg |
311 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9911047 |
cattgttgaatg |
9911036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University