View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_3 (Length: 652)
Name: NF21614_high_3
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 11 - 628
Target Start/End: Complemental strand, 23788280 - 23787663
Alignment:
| Q |
11 |
tcgaagaatattacaagtgaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagcta |
110 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788280 |
tcgaacaatattacaagtcaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagcta |
23788181 |
T |
|
| Q |
111 |
tataagcagctctcaaacacttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788180 |
tataagcagctctcaaacacttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaata |
23788081 |
T |
|
| Q |
211 |
cacaagggatatacatttcacatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788080 |
cacaagggatatacatttcacatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctc |
23787981 |
T |
|
| Q |
311 |
aaaggataaggtgtaggcacgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23787980 |
aaaggataaggtgtaggcacgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaagg |
23787881 |
T |
|
| Q |
411 |
atatatcttggtgtttgtaataggttcagattatagtgaaagtccttcaaggatataccttattatgcttttatcaaatctcacggtttgataactagaa |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23787880 |
atatatcttggtgtttgtaataggttcagattatagtgaaagtccttcaaggatataacttattatgcttttgtcaaatctcacggtttgataactagaa |
23787781 |
T |
|
| Q |
511 |
tcaaataatcataacctatgaaatccttacttaaagatattgcttagaaacaataagatacaattataattctttgaaaatcatatcaacaaggaagaat |
610 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23787780 |
taaaataatcataacctatgaaatccgtacttaaagatattgcttagaaacaataagataaaattagaattctttaaaaatcatatcaacaaggaagaat |
23787681 |
T |
|
| Q |
611 |
tgagttttatggaaagtc |
628 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23787680 |
tgagttttatggaaagtc |
23787663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 34725446 - 34725380
Alignment:
| Q |
17 |
aatattacaagtgaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaatttt |
83 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34725446 |
aatagtacaagtcaatgcaatggctcttattccaagggatatactctgcaatgttcaaatcaatttt |
34725380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 34725262 - 34725197
Alignment:
| Q |
164 |
tcacatatgtttttagagaaacacatctga-taagttagaaagaaatacacaagggatatacattt |
228 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
34725262 |
tcacatatatttttagagaaccacatttttctaagttagaaagaaatacacatgtgatatacattt |
34725197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 34725050 - 34724986
Alignment:
| Q |
372 |
ttgtagcgagaaatctaaggtattgtttggtagacaaggatatatcttggtgtttgtaataggtt |
436 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| ||||||||| ||| ||| ||||||| |||| |
|
|
| T |
34725050 |
ttgtagtgggaaatctaaggtattgttaagtagaaaaggatataccttagtgcttgtaattggtt |
34724986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University