View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_33 (Length: 280)
Name: NF21614_high_33
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 32463825 - 32463963
Alignment:
| Q |
127 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32463825 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagaaggtgctgga |
32463924 |
T |
|
| Q |
227 |
gacatatcaaaaccttgagcctgacccaaatgagagatt |
265 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32463925 |
gacatatcaaaaccttgagcttgacccaaatgagagatt |
32463963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 32456648 - 32456759
Alignment:
| Q |
127 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
226 |
Q |
| |
|
|||||| |||||||||||||| |||| ||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
32456648 |
tcaatgaaacatgtatgtaataaccagcgctaccaacataagagaataagcaattccttgatccagaatctgagcatcactagtaggagtaggtgctgga |
32456747 |
T |
|
| Q |
227 |
gacatatcaaaa |
238 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
32456748 |
gaaatatcaaaa |
32456759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 32461143 - 32461270
Alignment:
| Q |
127 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
226 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| |||| ||||||| | ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
32461143 |
tcaatgaagcatgtatgtaatcaccagcgcgaccaccataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctgga |
32461242 |
T |
|
| Q |
227 |
gacatatcaaaaccttgagcctgaccca |
254 |
Q |
| |
|
|| ||||||||| |||||| ||||||| |
|
|
| T |
32461243 |
gaaatatcaaaattttgagcatgaccca |
32461270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 32440033 - 32440167
Alignment:
| Q |
127 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
226 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||| ||||||||||| |||||||| ||||||| |||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
32440033 |
tcaatggagcatgtatgtaatgaccagcgccactaacataagaaaacaagcaattacttgatccagaatctgagcaccaccggtaggagtaggtgctgga |
32440132 |
T |
|
| Q |
227 |
gacatatcaaaaccttgagcctgacccaaatgaga |
261 |
Q |
| |
|
|| ||||||||| || ||| ||||||| |||||| |
|
|
| T |
32440133 |
gaaatatcaaaaattttagcatgacccatatgaga |
32440167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 32463706 - 32463758
Alignment:
| Q |
5 |
tgtcgaagaatatttctaaaatttcattaat-ataataagaataattacaata |
56 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32463706 |
tgtcaaagaatatttctaaaatttcattaataataataagaataattacaata |
32463758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 43600881 - 43600817
Alignment:
| Q |
127 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaa |
191 |
Q |
| |
|
|||||||||||| ||||| |||| | ||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
43600881 |
tcaatggaacatatatgtgatcagaagagccaccagcatgaggaagtaagcaattccttgatcaa |
43600817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University