View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_high_35 (Length: 267)
Name: NF21614_high_35
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 18357743 - 18357512
Alignment:
| Q |
23 |
ggggagatgaagggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacag |
122 |
Q |
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| T |
18357743 |
ggggagatgaagggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatataacag |
18357644 |
T |
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| Q |
123 |
caataataaccgggttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaacattctaattcaaaaat |
222 |
Q |
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| T |
18357643 |
taataataactgagttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaatattctaattcaaaaat |
18357544 |
T |
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| Q |
223 |
ctccattttccttgaattaagccatgatgatg |
254 |
Q |
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| T |
18357543 |
ctccattttccttgaattaagccatgatgatg |
18357512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 18345910 - 18345724
Alignment:
| Q |
19 |
gatgggggagatgaagggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatata |
118 |
Q |
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| T |
18345910 |
gatgggggagatgaagggtaaacataaatgtgcagtggttacataagaaaagtgtatatgaaagattgaggatgttcatattctctatgatggagatata |
18345811 |
T |
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| Q |
119 |
acagcaataataaccgggttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgggtaa |
205 |
Q |
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| T |
18345810 |
acagtaataataactgggttgaatttaaatgacaattgattctatagtctatttgtctccattagggcacgatgaacatttgtgtaa |
18345724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 18343551 - 18343507
Alignment:
| Q |
208 |
ttctaattcaaaaatctccattttccttgaattaagccatgatga |
252 |
Q |
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| T |
18343551 |
ttctaattcaaaaatctccattttccttgaattaagccatgatga |
18343507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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