View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_41 (Length: 242)
Name: NF21614_high_41
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37960606 - 37960830
Alignment:
| Q |
1 |
tatcacgacaatctgcaagaaacacaaagtagcagtgatcatcaagatcaacacaatcaccttcatcacttttgctatcaccctcctctgcttttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960606 |
tatcacgacaatctgcaagaaacacaaagtagcagtgatcatcaagatcaacacaatcaccttcatcacttttgctatcaccctcctctgcttttatcat |
37960705 |
T |
|
| Q |
101 |
acaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgttgtattctacaactctctttacatttatcagtaacccatttctttaacttctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960706 |
acaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgttgtattctacaactctctttacatttatcagtaacccatttctttaacttctgg |
37960805 |
T |
|
| Q |
201 |
acttgttcatagctcaacactaaag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37960806 |
acttgttcatagctcaacactaaag |
37960830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 37915525 - 37915477
Alignment:
| Q |
98 |
catacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgt |
146 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
37915525 |
catacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgt |
37915477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 37907369 - 37907314
Alignment:
| Q |
86 |
ctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgaca |
141 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
37907369 |
ctctgattttaccatacaaaaccaaatcaaggaacatgttacaacaaatgttgaca |
37907314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 3783652 - 3783596
Alignment:
| Q |
86 |
ctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgacaa |
142 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3783652 |
ctctgattttatcaaacaaaaccaaatcaaggaacatgttacaacaaaagttgacaa |
3783596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University