View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_45 (Length: 219)
Name: NF21614_high_45
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37717993 - 37718197
Alignment:
| Q |
1 |
tcactaccctggttcttgatgaggacgcttctaagtttgtggaccagtaactttgtgatgcatctgctactaccatatttccatcctttgcgatttgaaa |
100 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717993 |
tcactaccctttttcttgacgaggacgcttctaagtttgtggaccagtaactttgtgatgcatctgctactaccatatttccatcctttgcgatttgaaa |
37718092 |
T |
|
| Q |
101 |
aactcctttagaatctacaatagggttgtttctgttggctacccaaaccactgtttgtggttccagatcgtgataccatattcccaagtattttttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37718093 |
aactcctttagaatctacaatagggttgtttctgttggctacccaaaccactgtttgtggttccagatcgtgataccatattcccaagtattttttaaga |
37718192 |
T |
|
| Q |
201 |
ttctc |
205 |
Q |
| |
|
||||| |
|
|
| T |
37718193 |
ttctc |
37718197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University