View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_high_5 (Length: 603)
Name: NF21614_high_5
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 10 - 584
Target Start/End: Complemental strand, 41038947 - 41038362
Alignment:
| Q |
10 |
agatgaaactacatgtctttttagaactcttcaatggatgagagaattaggcctacataatgtatttattagtttgattactagacgatcgtaaatggcc |
109 |
Q |
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| T |
41038947 |
agatgaaactacatgtctttttagaactcttcaatggatgagagaattaggcctacataatgtatttattagtttgattactagacgatcgtaaatggcc |
41038848 |
T |
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| Q |
110 |
ttcatgagctgcttgatcagggctctgaatttgatatggtatcttgaatttttgcaattttatatttagttcttttataaacaaatggtgtaact----- |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038847 |
ttcatgagctgcttgatcagggctctgaatttgatatggtatcttgaatttttgcaattttatatttagttcttttataaacaaatggtgtaactcactc |
41038748 |
T |
|
| Q |
205 |
tttaggaagggagataacatttatggctaatgccaatgatttttattatcta------tgtaacttttatttgattttgaatgtaatgcatcaagttttt |
298 |
Q |
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| T |
41038747 |
tttaggaagggagataacatttatggctaatgccaatgatttttatcatctaccattttgtaacttttatttgattttgaatgtaatgcatcaagtgttt |
41038648 |
T |
|
| Q |
299 |
aagtagctctcacaaaatacttaaattccattcattttgaagattctccaaatctatcgtctaaataatgaaatttatatagaagaatttgagtttattg |
398 |
Q |
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| T |
41038647 |
aagtagctctcacaaaatacttaaattccattcattttgaagattctccaaatctatcatctaaataatgaaatttatatagaagaatttgagtttattg |
41038548 |
T |
|
| Q |
399 |
aaatttcttcatccaaatacactataaaattagagtttattcaaacttaaattactggatgatacatttttcaaacttgttttggaaaagttttatagaa |
498 |
Q |
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| T |
41038547 |
aaatttcttcatccaaatacactataaaattagagtttattcaaacttaaattactggatgatacatttttcaaacttgttttggaaaagttttatagaa |
41038448 |
T |
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| Q |
499 |
gagaactgcgtgtagttgcgctatggaatggtgacaaagatattagttgactattgtacatttggttatgcaaaacgtgatatctg |
584 |
Q |
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| T |
41038447 |
gagaactgcgtgtagttgcgctatggaatggtgacaaagatattagtcgactattgtacatttggttatgcaaaacgtgatatctg |
41038362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 32570010 - 32570075
Alignment:
| Q |
451 |
tactggatgatacatttttcaaacttgttttggaaaagttttatagaagagaactgcgtgtagttg |
516 |
Q |
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| T |
32570010 |
tactgcatgatacatttttcaaacttttttgggaaaagttttataaaaaagaaatgcgtgtagttg |
32570075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 32569947 - 32569984
Alignment:
| Q |
406 |
ttcatccaaatacactataaaattagagtttattcaaa |
443 |
Q |
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| T |
32569947 |
ttcatccaaatgcactataaaattagagtttattcaaa |
32569984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 1615523 - 1615588
Alignment:
| Q |
451 |
tactggatgatacatttttcaaacttgttttggaaaagttttatagaagagaactgcgtgtagttg |
516 |
Q |
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| T |
1615523 |
tactgcatgatacatttttcaaacttttttgggaaaagttttataaaagagaactgcgtgtagttg |
1615588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 1615460 - 1615497
Alignment:
| Q |
406 |
ttcatccaaatacactataaaattagagtttattcaaa |
443 |
Q |
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| T |
1615460 |
ttcatccaaatgcactataaaattagagtttattcaaa |
1615497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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