View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_7 (Length: 585)
Name: NF21614_high_7
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 10468239 - 10467694
Alignment:
| Q |
17 |
aaattatgacaatcatgtaagtaaggttagagaaaatcactaatccaaagttaaatcaacgtcacaattaatgttagtgggtgatacaattatcaagtaa |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468239 |
aaattatgacaatcatgtaag----gttagagaaaatcactaatccaaagttaaatcaacgtcacaattaatgttagtgggtgatacaattatcaagtaa |
10468144 |
T |
|
| Q |
117 |
tctcatctggtaaccctaatacatcttcactaaatatgtgtgaatttctttcactcataaggaaaatgtcaacgggtcatgaacaaagttagctaatact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10468143 |
tctcatctggtaaccctaatacatcttcactaaatatgtgtgaatttctttccctcataaggaaaatgtcaacgggtcatgaacaa-gttggctaatact |
10468045 |
T |
|
| Q |
217 |
ccatttcaaatgggttccacaaccatgatatattatgaagtattaacaacacaaaagggcatgcaggaccaaatacataccattcaatgaaattaatcaa |
316 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468044 |
c-atttcaaatgggtcccacaaccatgatatattatgaagtattaacaacacaaaagggcatgcaggaccaaatacataccattcaatgaaattaatcaa |
10467946 |
T |
|
| Q |
317 |
taaagaggaaaacagcctttagcattaatacatcttaattaaaaactttaaggtaagaggttaacggatccatctactttttcaaagtcttcattttgta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10467945 |
taaagaggaaaacagcctttagcattaatacatcttaattaaaaactttaaggtaagaggttaacggatccatctactttttcaaagtcttcattttgta |
10467846 |
T |
|
| Q |
417 |
tacaccaccaaaaaagtatttcattttgtataatattaatatcttgcctcttacctactttttaagcatacaacttgctccattgcttcctgcatcacca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10467845 |
tacaccaccaaaaaagtatttcattttgtataatattaatatcttgcctcttacctactttttaagcatacaacttgctccattgcttgctgcatcacca |
10467746 |
T |
|
| Q |
517 |
cgagattatcatgtctacnnnnnnnagctactaattaattatgaaaatgtat |
568 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10467745 |
cgagattatcatgtctactttttttagctactaattaattatgaaaatgtat |
10467694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University