View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_high_9 (Length: 526)
Name: NF21614_high_9
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 35757380 - 35757790
Alignment:
| Q |
8 |
ggacatcatcagtgtttatgttttagtttggattagtttgagacaaagactcattatcttatatcatgagctt--atttgatttagattgctttcttgat |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35757380 |
ggacaacatcagtgtttatgttttagtttggattagtttgagacaaagactcattatcttataacatgagcttcaatttgatttagattgctttcttgat |
35757479 |
T |
|
| Q |
106 |
aaaatccaatttgattaaacgcaattaagacgatattggttcatttattgtagnnnnnnnn--ttatattggttcttttcttttttatcaagtagttgag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
35757480 |
aaaatccaatttgattaaacgcaattaagacgatattggttcatttattctagaaaaaaaaaattatattggttcttttcttttttaccaagtagttggg |
35757579 |
T |
|
| Q |
204 |
tgg-ttagaaatccacatttttaaggtggaataagtgggatgaccaactctgatccctgcatatattatacaatgtctctatcaatatgctcatgggatc |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
35757580 |
ggggttagaaatccacatttttaaggtggaataagtgggatgaccaactctgatccctgcatatattatgcaatgtctctatcaatatgctcacgggatc |
35757679 |
T |
|
| Q |
303 |
gtctcattctgattttaccgaagcataattactacttgcttatattatgacaaatgatttatacaaactaaataacgaacaaatacgaagaattaattat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35757680 |
gtctcattctgattttaccgaagcataattactacttgcttatattatgacaaatgatttatacaaactaaataacgaataaatacgaagaattaattat |
35757779 |
T |
|
| Q |
403 |
gttgaaacata |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
35757780 |
gttgaaacata |
35757790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University