View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_1 (Length: 886)
Name: NF21614_low_1
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 34933683 - 34933180
Alignment:
| Q |
8 |
tgagatgaagttgtagaagaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttata |
107 |
Q |
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| T |
34933683 |
tgagaagaagttgtagaagaagaagaagctccaacgtatctatgtattttcattgcatgatagttttcgttcgtaatctctagggttgaagcttcttata |
34933584 |
T |
|
| Q |
108 |
agtagaatgagaagaatttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgct |
207 |
Q |
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| T |
34933583 |
agtagaatgagaagaatttgt---------ctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgct |
34933493 |
T |
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| Q |
208 |
tcattcgcaaggtatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaa |
307 |
Q |
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| T |
34933492 |
tcactcgcaaggtatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaa |
34933393 |
T |
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| Q |
308 |
tgatttcaagtaatgaaggcatgaaaacaatgaaaaacacttacaaaaaagaacaggagaggtttgaatattctctcgtgtaaatggcacatgttcattc |
407 |
Q |
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| T |
34933392 |
tgatttcaagtaatgaaggcttgaaaacaatgaaaaacacttacaaaaaagaacaggagaggtttgaatattctctcgtgtaaagggcacatgttcattc |
34933293 |
T |
|
| Q |
408 |
ataaatagagaggctcaggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttatacacacacacttcttcttctagggttgcagg |
507 |
Q |
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| T |
34933292 |
ataaatagagaggctcaggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttatacacacacacttgttcttctagggttgcagg |
34933193 |
T |
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| Q |
508 |
tatgtatgtaagt |
520 |
Q |
| |
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| T |
34933192 |
tatgtatgtaagt |
34933180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 602 - 866
Target Start/End: Complemental strand, 34933098 - 34932834
Alignment:
| Q |
602 |
gggggttagggtttaaaccttatgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagtacatat |
701 |
Q |
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| T |
34933098 |
gggggttagggtttaaaccttgtgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagtacatat |
34932999 |
T |
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| Q |
702 |
catcatcatcatctaattaccatctaacaattctgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagcgcaaagatga |
801 |
Q |
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| T |
34932998 |
catcatcatcatctaattaccatctaacaattttgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagtgcaaagatga |
34932899 |
T |
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| Q |
802 |
gatactcagcgggatgcccatcgagatacgcacacggaataactcctgcgcacatgttcgacaac |
866 |
Q |
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| T |
34932898 |
gatactcagcgggatgcccatcgagatacacacacggaataactcctgcgcacatgttcgacaac |
34932834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 34927161 - 34926958
Alignment:
| Q |
25 |
agaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttataagtagaatgagaagaat |
124 |
Q |
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| T |
34927161 |
agaagaagaagcttgaaggtatctatgtaatttcattgcatgacagttttttttcgtaatctctagggttgaagcttcttatacgtagaatgagaagaat |
34927062 |
T |
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| Q |
125 |
ttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcattcgcaaggtatct |
224 |
Q |
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| T |
34927061 |
ttgttgaacttgtctctctagggttgcattgcatgacagttttcgttcttatctctttcaatcttattttcatattcgttgcttcactctcaaggtatct |
34926962 |
T |
|
| Q |
225 |
atgt |
228 |
Q |
| |
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|||| |
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| T |
34926961 |
atgt |
34926958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 425 - 505
Target Start/End: Complemental strand, 34926816 - 34926734
Alignment:
| Q |
425 |
ggcttgggcttgaaaatatcattcagcccaaataactaactctttcggttatacacac--acacttcttcttctagggttgca |
505 |
Q |
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| T |
34926816 |
ggcttgggtttggaaatatcattcagcccaaataactaactctttcggttatacacacacacacttgttcttctcgggttgca |
34926734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 34926885 - 34926842
Alignment:
| Q |
324 |
aggcatgaaaacaatgaaaaacacttacaaaaaagaacaggagag |
368 |
Q |
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| T |
34926885 |
aggcatgaaaacaatgaaaaacacttaca-aaaagaacaggagag |
34926842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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