View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_10 (Length: 513)
Name: NF21614_low_10
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 2563708 - 2564220
Alignment:
| Q |
1 |
caaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacagattcttgtccattctactg |
100 |
Q |
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| T |
2563708 |
caaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacaggttcttgtccattctactg |
2563807 |
T |
|
| Q |
101 |
ctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttacaaactaattataacttcttagtatcattcatttatatatgg--- |
197 |
Q |
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| T |
2563808 |
ctcgtactctggttaccaagtaagaaattacagcttgtggaaaagagaatatttacaaactagttataacttcttagtatcattcatttatggttgtgat |
2563907 |
T |
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| Q |
198 |
-------ttgtgtaccaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagataacc |
290 |
Q |
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| T |
2563908 |
ttttgaattgtgtatgaaaaggatgaactattatgggctgctgcttggttatacaaggccagtggagaaagcaagtacttgaagtacatcacagataacc |
2564007 |
T |
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| Q |
291 |
aaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacagatacatataa |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2564008 |
aaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacacatacatataa |
2564107 |
T |
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| Q |
391 |
caaactaatgatcttttactaaacat---tagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaag |
487 |
Q |
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| T |
2564108 |
caaactaatgatcttttactaaacattagtagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaag |
2564207 |
T |
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| Q |
488 |
attcatagtgatg |
500 |
Q |
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| T |
2564208 |
attcatagtgatg |
2564220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 2573586 - 2573944
Alignment:
| Q |
30 |
tatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacagattcttgtccattctactgctcgtactctggttaccaagtaagaaatt |
129 |
Q |
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||||||| | ||||||||||||||||||| ||||||||||||| ||| | | |||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggcagttactcgggttcttgcccattctactgctcatactctggttaccaagtaagaaatt |
2573685 |
T |
|
| Q |
130 |
acagcttgtggaaaagagaatatttacaaactaattataact---tcttagtatcattcatttat-------atatgg--ttgtgtaccaaaaggatgaa |
217 |
Q |
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| T |
2573686 |
accacttgtaaaaaagaaaacatttgaagactaataattaatgtttcatag-atcattcacttatggctgtgattttgaattgtgtatgaaaaggatgaa |
2573784 |
T |
|
| Q |
218 |
ctattatgggctgctgcttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagataaccaaggttggaatcaggcagcgtctgagt |
317 |
Q |
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|||||||||||||| ||||| |||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||| | |
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| T |
2573785 |
ttattatgggctgctacttggctatacaaggctagtggggaaagcaaatacttgacgtacatcacaagtaaccaaggttggagtcaagcagtgtctgaat |
2573884 |
T |
|
| Q |
318 |
tcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatattta |
377 |
Q |
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| T |
2573885 |
ttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatattta |
2573944 |
T |
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