View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_12 (Length: 489)
Name: NF21614_low_12
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 51 - 485
Target Start/End: Complemental strand, 43587312 - 43586878
Alignment:
| Q |
51 |
aataagtacattaatactagcgagcttaagaaatttggtctatggtcgggagatggttgggctgcaatttttattttacctctgaactttttcgctttct |
150 |
Q |
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| T |
43587312 |
aataagtacattaatactagtgagcttaagaaatttggtctatggtcgggagatggttgggctgcaattttttttttacctctgaactttttcgctttct |
43587213 |
T |
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| Q |
151 |
ttgctacctttgttgggtttggttaatgtaagagtactagaaaggggctgaagctaatttcgcacacggtgctttggtcgatttggaagtctagaccgag |
250 |
Q |
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| T |
43587212 |
ttgctacctttgttgggtttggttaatgtaagaacactagaaaggggctgaagctaatttggcacacaatgctttggtcgatttggaagtctagaccgag |
43587113 |
T |
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| Q |
251 |
cacctatttaataataacgttgagaaggcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc |
350 |
Q |
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| T |
43587112 |
cacctatttattaataacgttgagaacgcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc |
43587013 |
T |
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| Q |
351 |
ttgccttgtcctttctatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag |
450 |
Q |
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| T |
43587012 |
ttgccttgtcctttcaatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag |
43586913 |
T |
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| Q |
451 |
ttctgctggttgttatatctcggttgatgatgtcc |
485 |
Q |
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| T |
43586912 |
ttctgctggttgttatatctcggttgttgaggtcc |
43586878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43587374 - 43587326
Alignment:
| Q |
1 |
cattttgttttatatccgggtatgccttgtgcttggatttgtattctatcaata |
54 |
Q |
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| T |
43587374 |
cattttgtttcatatccgggtatg-----tgcttggatttgtattctatcaata |
43587326 |
T |
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