View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21614_low_13 (Length: 488)

Name: NF21614_low_13
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21614_low_13
NF21614_low_13
[»] chr1 (2 HSPs)
chr1 (50-484)||(43586878-43587312)
chr1 (2-52)||(43587351-43587401)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 50 - 484
Target Start/End: Complemental strand, 43587312 - 43586878
Alignment:
Q  50 aataagtacattaatactagcgagcttaagaaatttggtctatggtcgggagatggttgggctgcaatttttattttacctctgaactttttcgctttct 149  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43587312 aataagtacattaatactagtgagcttaagaaatttggtctatggtcgggagatggttgggctgcaattttttttttacctctgaactttttcgctttct 43587213  T
Q  150 ttgctacctttgttgggtttggttaatgtaagagtactagaaaggggctgaagctaatttcgcacacggtgctttggtcgatttggaagtctagaccgag 249  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  43587212 ttgctacctttgttgggtttggttaatgtaagaacactagaaaggggctgaagctaatttggcacacaatgctttggtcgatttggaagtctagaccgag 43587113  T
Q  250 cacctatttaataataacgttgagaaggcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc 349  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43587112 cacctatttattaataacgttgagaacgcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc 43587013  T
Q  350 ttgccttgtcctttctatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag 449  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43587012 ttgccttgtcctttcaatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag 43586913  T
Q  450 ttctgctggttgttatatctcggttgatgatgtcc 484  Q
    |||||||||||||||||||||||||| ||| ||||    
T  43586912 ttctgctggttgttatatctcggttgttgaggtcc 43586878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 43587351 - 43587401
Alignment:
Q  2 catacccggatataaaacaaaatggtagaaatccaccaatgatctatcaat 52  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  43587351 catacccggatatgaaacaaaatggtacaaatccaccaatgatctagcaat 43587401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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