View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_low_15 (Length: 453)
Name: NF21614_low_15
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 48659285 - 48659114
Alignment:
| Q |
13 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcagcagcgatatattctg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48659285 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcaacagcgatatattctg |
48659186 |
T |
|
| Q |
113 |
cctctgccgttgattgagctataacttcttgnnnnnnngaacatcatgagaaaattccagaacccattgtaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
48659185 |
cctctgccgttgattgagctataacttcttgtttttttgaacaccatgagaaaattccagaacccattgtaa |
48659114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 9310038 - 9309867
Alignment:
| Q |
13 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcagcagcgatatattctg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9310038 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcaacagcgatatattctg |
9309939 |
T |
|
| Q |
113 |
cctctgccgttgattgagctataacttcttgnnnnnnngaacatcatgagaaaattccagaacccattgtaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
9309938 |
cctctgccgttgattgagctataacttcttgtttttttgaacaccatgagaaaattccagaacccattgtaa |
9309867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 31084815 - 31084644
Alignment:
| Q |
13 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcagcagcgatatattctg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
31084815 |
aatatcttagtactttctgtttgaatcatgtgcaagtctgtcatgagctttctgatccaaatagcttggttcaccgcagcagcaacaacgatatattctg |
31084716 |
T |
|
| Q |
113 |
cctctgccgttgattgagctataacttcttgnnnnnnngaacatcatgagaaaattccagaacccattgtaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
31084715 |
cctctgccgttgattgagctataacttcttgtttttttgaacaccatgagaaaactccagaacccattgtaa |
31084644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 39994727 - 39994694
Alignment:
| Q |
405 |
tatttgacaacactttgtactatagtgcatattg |
438 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
39994727 |
tatttgacaacactttgtactatattgcatattg |
39994694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 22135120 - 22135048
Alignment:
| Q |
61 |
tttctgatccaaatagcttggttcaccgcagcagcagcagcgatatattctgcctctgccgttgattgagcta |
133 |
Q |
| |
|
||||||| ||||||||||||||| | ||||| || || | |||||||| ||||||||||| |||||||||| |
|
|
| T |
22135120 |
tttctgagccaaatagcttggtttgcagcagctgctgctgaaatatattcagcctctgccgtagattgagcta |
22135048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University