View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_16 (Length: 450)
Name: NF21614_low_16
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 40192718 - 40192944
Alignment:
| Q |
20 |
cgcccacccctccattctatgcaacttgccatctagtgcatgggaaatgctaatagcataatatatttttcttatgctctgttcataattcatattctta |
119 |
Q |
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| T |
40192718 |
cgcccacccctccattctatgcaacttgccatctagtgcatgggaaatgctaatagcataatatatttttcttatgctctgttcataattcatattctta |
40192817 |
T |
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| Q |
120 |
ataatacag---taataaacatgagatgaagaaagaaacaaaaatgtaccgataactctactgcattttattttgagcgtagaggattcggttcctgctt |
216 |
Q |
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| T |
40192818 |
ataatacagtaataataaacatgagatgaagaaagaaacaaaaatgtaccgataactctactgcattttattttgagcgtagaggattcggttcctgctt |
40192917 |
T |
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| Q |
217 |
ggcgaagaatatcacgtccttagtctt |
243 |
Q |
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| T |
40192918 |
ggagaagaatatcacgtccttagtctt |
40192944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 225 - 435
Target Start/End: Original strand, 40193084 - 40193294
Alignment:
| Q |
225 |
atatcacgtccttagtcttactaaaagctaaatgaatattagcacttttttgataaatcgatttatttttgacaaatttttgataaatcgattgtcaatt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40193084 |
atatcacgtccttagtcttactaaaagctaaatgaatattagcacttttttgataaatcgatttttttttgacaaatttttgataaatcgattgtcaatt |
40193183 |
T |
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| Q |
325 |
agattataaactaatcctatgagataactgataagtattttctttcattggagccagcaatactacttctactgagaatatatatatgctcacttcttga |
424 |
Q |
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| T |
40193184 |
agattataaactaatcctatgagataactgataagtattttctttcattggagccagcaatactacttctactgagaatatatatatgctcacttcttga |
40193283 |
T |
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| Q |
425 |
tagccgttcat |
435 |
Q |
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| T |
40193284 |
tagccgttcat |
40193294 |
T |
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