View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_17 (Length: 443)
Name: NF21614_low_17
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41911205 - 41911510
Alignment:
| Q |
1 |
aaaaaatgcatattattcgtttctaatataaacatcagacgtaaactcattcacttctttcactttaattatttgaccatcattaaattagaccaaaggt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41911205 |
aaaaaatgcatattattcgtttctaataaaaacatcagacgtaaactcattcacttctttcactttaattatttgaccatgattaaattagaccaaaggt |
41911304 |
T |
|
| Q |
101 |
gacatgcattataaaacaaatccatcatatcaatctaattaagtgcacattaattgatttaaagaaaaaaggtcatatatcttatcgaattcttttgaat |
200 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41911305 |
gacatacattataaaacaaatctatcatatcaatctaattaagtgcacatttattgatttaaagaaaaaaggtcatatatcttatcgaattcttttcaat |
41911404 |
T |
|
| Q |
201 |
attcaaaagataggttggagaaatatgatagtaaatccaaaagcgactgtttaatcttggcttaataatatagggatatacatatttgaacattacgtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41911405 |
attcaaaagataggttggagaaatatgatagtaaatccaaaagcgactgtttaatcttggcttaataatatagggatatacatatttgaacattacgtag |
41911504 |
T |
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| Q |
301 |
gatatg |
306 |
Q |
| |
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|||||| |
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| T |
41911505 |
gatatg |
41911510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 41911571 - 41911632
Alignment:
| Q |
365 |
catcttgaattaattgatttcacggagacacaaaatgaatcgcatctttcaagaggtttctg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41911571 |
catcttgaattaattgatttcacggagacacaaaatgaatcgcatctttcaagaggtttctg |
41911632 |
T |
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