View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_18 (Length: 440)
Name: NF21614_low_18
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2443599 - 2443331
Alignment:
| Q |
1 |
tgtgcacttttcttgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtgc |
100 |
Q |
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| T |
2443599 |
tgtgcacttttcttgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtga |
2443500 |
T |
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| Q |
101 |
ggaacgaaaggatttgatgcaaccaagtgagggagatt------------gatgggataaaagtgttatctttgcattagagtttgagtagattgaaaat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443499 |
ggaacgaaaggatttgatgcaaccaagtgagggagattgatgaagtaattgatgggataaaagtgttatctttgcattagagtttgagtagattgaaaat |
2443400 |
T |
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| Q |
189 |
acatgcgtcaactgctttttaaggttggttgctgtcttgtctttggggttcggatgtgagctgtcctgg |
257 |
Q |
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| T |
2443399 |
acatgcgtcaactgctttttaaggttggttgctgtcttgtctttggggttcggatgtgagctgtcctgg |
2443331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 9603400 - 9603490
Alignment:
| Q |
340 |
ttcatttctgtttcggtacttgagttgataatggtaggctgtgttccgctaatagtgatgtcgcttatatatggcattgtgtaggtctgtg |
430 |
Q |
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||||||||||||||||| |||||||| | |||||||| ||||| | |||||||||||||||||||||| ||||||| |||||||||| |
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| T |
9603400 |
ttcatttctgtttcggtgcttgagttattggcggtaggctatgttcagataatagtgatgtcgcttatatactgcattgtctaggtctgtg |
9603490 |
T |
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