View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_20 (Length: 422)
Name: NF21614_low_20
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 22686307 - 22686547
Alignment:
| Q |
16 |
ctggtgttggggaaaagtgcagagagattatcacttacaagtgttaaaaactcaacagaagcaccctacaaataagaacaatgcacctttgagcacacat |
115 |
Q |
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| T |
22686307 |
ctggtgttggggaaaagtgcagagagattatcacttacaagtgttaaaaactcaacagaagcaccctacaaataagaacaatgcacctttgagcacacat |
22686406 |
T |
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| Q |
116 |
ttgagattaaatttagcaatcaaacatatagaaagaattgtaaacagatcaaatcttgaacttacaaatagttccaaggataaaataatctgcagcttgc |
215 |
Q |
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| T |
22686407 |
ttgagattaaatttagcaatctaac--atagaaagaattgcaaacagatcaagtcttgaacttacaaatagttccaaggataaaatgatctgcagcttgc |
22686504 |
T |
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| Q |
216 |
acaaaacatagttgttagatttcattttatattcacaaattca |
258 |
Q |
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| T |
22686505 |
acaaaacatagttgttagatttcactttatattcacaacttca |
22686547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 22698109 - 22698341
Alignment:
| Q |
16 |
ctggtgttggggaaaagtgcagagagattatcacttacaagtgttaaaaactcaacagaagcaccctacaaataagaacaatgcacctttgagcacacat |
115 |
Q |
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| T |
22698109 |
ctggtgttagggaaaagtgatgagagattatcacttataagtgttaaaaactcaacacaagaagcctac-aataagaactatgcacttttgagcatacat |
22698207 |
T |
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| Q |
116 |
ttgagattaaatttagcaatcaaacatatagaaagaattgtaaacagatcaaatcttgaacttacaaatagttccaaggataaaataatctgcagcttgc |
215 |
Q |
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| T |
22698208 |
gagaaattaaatttagcaaaacaaaatataaaaagcactgcaagaagatcaaatcttaaacttacaaatagttccatgtataaaacgatctgca-attgg |
22698306 |
T |
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| Q |
216 |
acaaaacatagttgttagatttcattttatattca |
250 |
Q |
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| T |
22698307 |
acaaatcatagttattagatttcactttatattca |
22698341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 22687793 - 22687886
Alignment:
| Q |
291 |
tctcaatcatagtcgtgaagataacaaaaaccttgatgccgtagtcatcaagatcatggttttatac--gtttttccaaactcaaacttaataa |
382 |
Q |
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| T |
22687793 |
tctcaatcatagtcgtgaagacaacaaaaaccttgatgtcgtagtcatcaagatcacggttttatacttttttttccaaactcaaacttaataa |
22687886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 22686633 - 22686714
Alignment:
| Q |
265 |
attgtggtcaaattacacaaatgtggtctcaatcatagtcgtgaagataacaaaaaccttgatgccgtagtcatcaagatca |
346 |
Q |
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| T |
22686633 |
attgtggtcaaattacacaaatgtggtctcaatcatagccgtgaagacaaccaaaaccttgatatcgtagtcatcaagatca |
22686714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 22686573 - 22686633
Alignment:
| Q |
259 |
ttttatattgtggtcaaattacacaaatgtggtctcaatcatagtcgtgaagataacaaaa |
319 |
Q |
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| T |
22686573 |
ttttatattgtggtcaaattacacaaatgtggtctcaatcatagtcgtgaagacaacaaaa |
22686633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 22686861 - 22686916
Alignment:
| Q |
348 |
ggttttatacgtttttccaaactcaaacttaataattatattattctcgtaaagag |
403 |
Q |
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| T |
22686861 |
ggttgtatacctttttccaaactcaaacctaataattatattattctcgtaaagag |
22686916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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