View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_21 (Length: 417)
Name: NF21614_low_21
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 38 - 400
Target Start/End: Original strand, 2357454 - 2357809
Alignment:
| Q |
38 |
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta |
137 |
Q |
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| T |
2357454 |
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta |
2357553 |
T |
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| Q |
138 |
tacacatttttataaaattttcacttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttatt |
237 |
Q |
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| T |
2357554 |
tacacatttttataaaattttcacttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttact |
2357653 |
T |
|
| Q |
238 |
gaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtac |
337 |
Q |
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| T |
2357654 |
gaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtac |
2357753 |
T |
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| Q |
338 |
cttcaagtgataatcaaagaaaccctaatggctaagattatatccagctggtcctctctctgc |
400 |
Q |
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| T |
2357754 |
cttcaagcgataatcaaagaaacc-------ctaagattatatccagttggtcctctctctgc |
2357809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 365
Target Start/End: Original strand, 2362891 - 2363096
Alignment:
| Q |
160 |
acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa |
259 |
Q |
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| T |
2362891 |
acttcttttacagacactaatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttgcttagaaatcctctaatattgaaa |
2362990 |
T |
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| Q |
260 |
aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaa |
359 |
Q |
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| T |
2362991 |
aaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaa |
2363090 |
T |
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| Q |
360 |
ccctaa |
365 |
Q |
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| T |
2363091 |
cactaa |
2363096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 365
Target Start/End: Original strand, 2351285 - 2351465
Alignment:
| Q |
185 |
ggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttcc |
284 |
Q |
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| T |
2351285 |
ggaggaagtgacacaagtagtgttactcttacatgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgacactc |
2351384 |
T |
|
| Q |
285 |
acgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
365 |
Q |
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| T |
2351385 |
acgttggcaaagaaaggcttgtaaacgagtcggatattggtaagttggtataccttcaagctatagtaaaagaaaccctaa |
2351465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 365
Target Start/End: Original strand, 2368684 - 2368842
Alignment:
| Q |
207 |
ttacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgt |
306 |
Q |
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|||||||||| |||||||||||||||||| | | |||||||| | ||||||||||||||||| ||||||||| || ||||||| ||| | ||||| |
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| T |
2368684 |
ttacccttacatgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaacttgatactcaagttggaaaagagaggtgtgt |
2368783 |
T |
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| Q |
307 |
aacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
365 |
Q |
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|| | || | || ||| | ||||||||||| ||||||| || ||||||||||||||| |
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| T |
2368784 |
aagagagacagacatagacaagttggtgtatcttcaagccattgtcaaagaaaccctaa |
2368842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 2307175 - 2307242
Alignment:
| Q |
209 |
acccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaact |
276 |
Q |
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| T |
2307175 |
acccttacatgggcactatgtttgctattgaacaatcctcttgtaatggaaaaagcaaaagaagaact |
2307242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 365
Target Start/End: Original strand, 4305589 - 4305794
Alignment:
| Q |
160 |
acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa |
259 |
Q |
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| T |
4305589 |
acttcgtttaaagacactgattgcaggaggagttgacacaactagtgtcacccttatatgggcaatgtgtttgttactggaaaatcctcttgtaatagaa |
4305688 |
T |
|
| Q |
260 |
aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaa |
359 |
Q |
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|||||| ||| |||||||||| |||| ||||| | ||| | ||||||| | ||||||||||| | |||||||| |||||||||| |||| ||||||||| |
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| T |
4305689 |
aaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgatagtcaaagaaa |
4305788 |
T |
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| Q |
360 |
ccctaa |
365 |
Q |
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|||||| |
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| T |
4305789 |
ccctaa |
4305794 |
T |
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