View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_24 (Length: 362)
Name: NF21614_low_24
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 47628430 - 47628766
Alignment:
| Q |
9 |
agcacagacacctctgacattaggcgtgtctcggtgtccaatgcgcgtcagtgtccgacacccatagacactcgtaccataagtgtcccaaaaccaacnn |
108 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47628430 |
agcagagacacctctgacattaggcatgtctcggtgtccaatgcgcgtcagtgtccgacacccatagacactcgtaccataagtgtcccaaaaccaactt |
47628529 |
T |
|
| Q |
109 |
nnnnn-cctcgttttgacacactttaattctaggacacttctgagacacttgtaggttgtaagtatttaattgttgaaaacaatgaatattaggaacaac |
207 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47628530 |
tattttcctcgttttgacacaatttaattcttggacacttctgagacacttgtaggttgtaagtatttaattgttgaaaacaatgaatattaggaagaac |
47628629 |
T |
|
| Q |
208 |
taacctgagacagtaacgaatcagccagaaagcgcattccacgagtagctatatatcttggaggagagggtaaaaatggaagaaactcaccaccattctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47628630 |
taacctgagacagtaacgaatcagccagaaagcgcattccacgagtagctatatatcttggaggagagggtaaaaatggaagaaactcaccaccattctt |
47628729 |
T |
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| Q |
308 |
caactctcctacagtacccttccattctcgaaccaaa |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47628730 |
caactctcctacagtacccttccattctcgaaccaaa |
47628766 |
T |
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