View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_26 (Length: 354)
Name: NF21614_low_26
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 43588113 - 43587789
Alignment:
| Q |
20 |
ctgaagagaatatatctgatcaagcttttgcggagtatctccaaaactctgagatgattaaaggtgtattcgagaaggagattagtaaagtccaggctac |
119 |
Q |
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| T |
43588113 |
ctgaagagaatatatctgatcaagcttttgcagagtatctccaaaactctgagatgattaaaggtgtattcgagaaggagatgaggaaagtccaggatac |
43588014 |
T |
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| Q |
120 |
catcgaggagattatgtcggatgtgaaacctgctctaacttttaaagccaagtcgaaactattgtctcttgagtttgatatattttctcccaccattatt |
219 |
Q |
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| T |
43588013 |
tatcgaggagattatgtcggatgtgaaacctgctctaacttttaaagccaagtcgaaactattgtctcttgagtttgatatattttctcccaccattatt |
43587914 |
T |
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| Q |
220 |
cgggagaaagatacaaggtagaatctatatttatgcc--nnnnnnnnnnnnggcattcttgttagcaagcattatatgagtttactttgattattgttcc |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43587913 |
cgggagaaatatacaaggtagaatctatatttatgcctttttttttttgttggtattcttgttagcaagcattatatgagtttactttgaatattgttcc |
43587814 |
T |
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| Q |
318 |
ttattcatgataatgatgataatga |
342 |
Q |
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|||||||||||||||||||| |||| |
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| T |
43587813 |
ttattcatgataatgatgatgatga |
43587789 |
T |
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