View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_low_27 (Length: 344)
Name: NF21614_low_27
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 29527700 - 29527556
Alignment:
| Q |
182 |
acagcatctatcgtacccgggtcataccctacttcaggcccacatttcttcaacacaatcgttttatcttgcatgcctaaaaacttaacattgtcatatt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29527700 |
acagcatctatcgtacccgggtcataccctacttcaggcccacatttcttcaacacaatcgttttatcttgcatgcctaaaaacttaacattgtcatatt |
29527601 |
T |
|
| Q |
282 |
tcacataacatccttctagttgcactacgccgccgcacacgccag |
326 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29527600 |
tcacataacacccttctagttgcactacgccgccgcacacgccag |
29527556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 29527881 - 29527756
Alignment:
| Q |
1 |
ccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcctctgtaacacaatcttgacactccacaaaactcaaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29527881 |
ccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcctctgtaacacaatcttgacactccacaaaactcaaatcc |
29527782 |
T |
|
| Q |
101 |
ccaacacactgtgccattcccttcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29527781 |
ccaacacactgtgccattcccttcaa |
29527756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 33327979 - 33327878
Alignment:
| Q |
2 |
cccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcctctgtaacacaatcttgacactccacaaaactcaaatccc |
101 |
Q |
| |
|
|||||||||| |||||||||||| ||| | ||||||| || ||||||||| ||| || || ||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
33327979 |
cccaagaacaaatctccataatctgcagtaccacaatcacttttcaaccgtccgatcgcttcaacaacacaatcttgacactccccaaaactaagatccc |
33327880 |
T |
|
| Q |
102 |
ca |
103 |
Q |
| |
|
|| |
|
|
| T |
33327879 |
ca |
33327878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University