View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21614_low_31 (Length: 300)

Name: NF21614_low_31
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21614_low_31
NF21614_low_31
[»] chr7 (10 HSPs)
chr7 (16-300)||(22685930-22686216)
chr7 (16-81)||(22697767-22697832)
chr7 (255-300)||(22697973-22698018)
chr7 (139-204)||(30900113-30900179)
chr7 (176-212)||(6894350-6894386)
chr7 (138-200)||(5336502-5336565)
chr7 (138-212)||(38622879-38622954)
chr7 (167-213)||(7982370-7982416)
chr7 (167-205)||(21451587-21451625)
chr7 (140-211)||(25314032-25314104)
[»] chr4 (9 HSPs)
chr4 (139-223)||(30617270-30617354)
chr4 (176-213)||(40280996-40281033)
chr4 (176-212)||(39064899-39064935)
chr4 (138-204)||(26275540-26275607)
chr4 (175-212)||(20709994-20710031)
chr4 (137-212)||(2562468-2562544)
chr4 (139-222)||(34416883-34416967)
chr4 (164-204)||(49983146-49983186)
chr4 (167-211)||(53315237-53315281)
[»] chr8 (4 HSPs)
chr8 (138-206)||(1310122-1310191)
chr8 (137-200)||(43935148-43935212)
chr8 (140-212)||(12856408-12856479)
chr8 (153-212)||(26273054-26273114)
[»] chr3 (3 HSPs)
chr3 (170-223)||(34357994-34358047)
chr3 (168-210)||(7889135-7889177)
chr3 (138-199)||(46516784-46516846)
[»] chr2 (4 HSPs)
chr2 (137-207)||(39597568-39597639)
chr2 (131-199)||(44460330-44460399)
chr2 (146-206)||(29378501-29378562)
chr2 (137-212)||(44458227-44458303)
[»] chr1 (5 HSPs)
chr1 (139-204)||(46937564-46937630)
chr1 (138-193)||(1880082-1880137)
chr1 (138-204)||(7347687-7347754)
chr1 (138-212)||(37143294-37143369)
chr1 (171-217)||(37129079-37129125)
[»] chr6 (9 HSPs)
chr6 (137-212)||(21869849-21869925)
chr6 (140-204)||(7180705-7180769)
chr6 (175-212)||(10011954-10011991)
chr6 (167-212)||(31322632-31322677)
chr6 (137-212)||(2732922-2732998)
chr6 (139-198)||(9163756-9163816)
chr6 (174-210)||(21891000-21891036)
chr6 (168-212)||(25100444-25100488)
chr6 (149-200)||(29165841-29165893)
[»] chr5 (5 HSPs)
chr5 (137-211)||(34156643-34156718)
chr5 (131-195)||(37056370-37056435)
chr5 (148-207)||(8928409-8928469)
chr5 (164-200)||(9130957-9130993)
chr5 (167-222)||(18839176-18839231)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 22685930 - 22686216
Alignment:
Q  16 cagaacaaacaaagtgctacaattattgttgcaaatattcctccaactgaatacaaaggtaaacaataattagtagctacatttcaaagag--aaattaa 113  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  22685930 cagaacaaacaaagtgctacaattactgttgcaaatattcctccaactgaatacaaaggtaaacaataattagtagctacatttcaaagagagaaattaa 22686029  T
Q  114 aaatggtatagtttataaataaatgctatttaacaatattttgtactaaaagagtatcacggaacaatagcaatttgttcaaattccgctacgctataga 213  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  22686030 aaatggtatagtttatgtataaatgctatttaacaatattttgtactaaaagagtatcacggaacaatagcaatttgaacaaattccgctacgctataga 22686129  T
Q  214 gctggtatagttgtttttaacaacatcgtaaagaccatataattttgatcaagaaactaacctgaaatatatgaaagcaggcttaga 300  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22686130 gctggtatagttgtttttaacaacattgtaaagaacatatgattttgatcaagaaactaacctgaaatatatgaaagcaggcttaga 22686216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 22697767 - 22697832
Alignment:
Q  16 cagaacaaacaaagtgctacaattattgttgcaaatattcctccaactgaatacaaaggtaaacaa 81  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  22697767 cagaacaaacaaagtgctacaactattgtcgcaaatattcctccaactgaatacaaaagtaaacaa 22697832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 22697973 - 22698018
Alignment:
Q  255 attttgatcaagaaactaacctgaaatatatgaaagcaggcttaga 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  22697973 attttgatcaataaactaacctgaaatatatgaaagcaggcttaga 22698018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 30900113 - 30900179
Alignment:
Q  139 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    |||||| |||||||||||||||||| || ||||| | |||||||||| ||| |||||||||||||||    
T  30900113 ctatttcacaatattttgtactaaatagtgtatcgctgaacaatagcgattcgttcaaattccgcta 30900179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 6894350 - 6894386
Alignment:
Q  176 aacaatagcaatttgttcaaattccgctacgctatag 212  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6894350 aacaatagcaatttgttcaaattccactacgctatag 6894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 5336565 - 5336502
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattcc 200  Q
    |||||||||||| | ||||| ||||| || |||||| |||||||||| ||||||||||||||||    
T  5336565 gctatttaacaacactttgtgctaaacagtgtatcatggaacaataggaatttgttcaaattcc 5336502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 38622879 - 38622954
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    ||||||| |||| ||||||| ||||| || |||||| ||||||||| | |||| ||||||||| ||||||||||||    
T  38622879 gctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctatag 38622954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 7982370 - 7982416
Alignment:
Q  167 gtatcacggaacaatagcaatttgttcaaattccgctacgctataga 213  Q
    |||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  7982370 gtatcacaaaacaatagcaatttgttcaaattccactatgctataga 7982416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 21451587 - 21451625
Alignment:
Q  167 gtatcacggaacaatagcaatttgttcaaattccgctac 205  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  21451587 gtatcgcggaacaatagcaatttgttaaaattccgctac 21451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 25314032 - 25314104
Alignment:
Q  140 tatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctata 211  Q
    |||||||||| | ||||||| ||| || ||||||| |||||||| | ||||||||||||||| ||| ||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctata 25314104  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 30617270 - 30617354
Alignment:
Q  139 ctatttaacaatattttgtactaaaagagtatcacggaacaatagcaatttgttcaaattccgctacgctatagagctggtatag 223  Q
    |||||| ||||||||||||||||| || ||||||| ||||| |||| ||||||||||||||||||| || |||| |||| |||||    
T  30617270 ctatttcacaatattttgtactaatagcgtatcacagaacactagcgatttgttcaaattccgctatgcaatagcgctgctatag 30617354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 40280996 - 40281033
Alignment:
Q  176 aacaatagcaatttgttcaaattccgctacgctataga 213  Q
    |||||||||||||||| |||||||||||||||||||||    
T  40280996 aacaatagcaatttgtgcaaattccgctacgctataga 40281033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 39064899 - 39064935
Alignment:
Q  176 aacaatagcaatttgttcaaattccgctacgctatag 212  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39064899 aacaatagcaatttgttcaaattccactacgctatag 39064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 26275540 - 26275607
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    ||||||| |||||||||||||||||| || ||||   ||||||||||| |||||||||||| ||||||    
T  26275540 gctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgcta 26275607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 20709994 - 20710031
Alignment:
Q  175 gaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  20709994 gaacaatagcgatttgttcaaattccgctacgttatag 20710031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 2562544 - 2562468
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||| ||||| |||||||||||| || |||||| | ||  ||||| |||||||||||||||||| | ||||||    
T  2562544 tgctatttgacaatgttttgtactaaacagcgtatcaggaaattatagcgatttgttcaaattccgctgcactatag 2562468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 34416967 - 34416883
Alignment:
Q  139 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatagagctggtata 222  Q
    |||||| |||| | ||||||||||| |||| ||| |||||||||||| |||||||| |||||  ||| ||||| |||||| ||||    
T  34416967 ctatttgacaacactttgtactaaatagaggatcgcggaacaatagctatttgttccaattcttctatgctattgagctgctata 34416883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 49983186 - 49983146
Alignment:
Q  164 agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  49983186 agagtatagcggaacaatagtaatttgttcaaattccgcta 49983146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 53315281 - 53315237
Alignment:
Q  167 gtatcacggaacaatagcaatttgttcaaattccgctacgctata 211  Q
    ||||||||||||||||||  ||||||||||||||  |||||||||    
T  53315281 gtatcacggaacaatagcggtttgttcaaattccattacgctata 53315237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 1310191 - 1310122
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacg 206  Q
    ||||||| ||||||| |||||||||| || |||||| |||||||||||||||||||||||||| ||||||    
T  1310191 gctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctgctacg 1310122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 43935148 - 43935212
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattcc 200  Q
    |||||||| |||||||||||| ||||| || |||||||||||||||||  |||||||||||||||    
T  43935148 tgctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattcc 43935212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 12856408 - 12856479
Alignment:
Q  140 tatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||||||| ||||||||||| || |||||  | |||||| |||||||||||||||||| ||||| |||||    
T  12856408 tatttaacaatagtttgtactaaatagcgtatc--gtaacaattgcaatttgttcaaattccactacggtatag 12856479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 26273054 - 26273114
Alignment:
Q  153 tttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    ||||||||||| || ||||||| |||||||||  |||| |||||||||| |||||||||||    
T  26273054 tttgtactaaacagcgtatcacagaacaatagtgatttattcaaattcctctacgctatag 26273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 34357994 - 34358047
Alignment:
Q  170 tcacggaacaatagcaatttgttcaaattccgctacgctatagagctggtatag 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  34357994 tcacggaacaatagcaatttgttcaaattccgctacgctgtagcgctgttatag 34358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 7889177 - 7889135
Alignment:
Q  168 tatcacggaacaatagcaatttgttcaaattccgctacgctat 210  Q
    |||||||||||||||||| |||||| ||||||||||| |||||    
T  7889177 tatcacggaacaatagcagtttgttgaaattccgctatgctat 7889135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 46516846 - 46516784
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattc 199  Q
    ||||||| |||||||||||||| ||| || ||||||| |||||||| |||||| |||||||||    
T  46516846 gctatttcacaatattttgtaccaaacagtgtatcaccgaacaatatcaatttattcaaattc 46516784  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 39597639 - 39597568
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgc 207  Q
    |||||||| |||||||||||||||||| || ||||| |||||||||||| |||| || ||||||||||||||    
T  39597639 tgctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgc 39597568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 44460399 - 44460330
Alignment:
Q  131 aataaatgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattc 199  Q
    ||||| |||||||| |||| ||||||||||||| || |||||| |||||| ||||| |||||||||||||    
T  44460399 aataattgctatttgacaacattttgtactaaatagtgtatcatggaacagtagcattttgttcaaattc 44460330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 29378562 - 29378501
Alignment:
Q  146 acaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacg 206  Q
    |||||| ||||||| ||| || ||||| | |||||||| |||||||||||||||||||||||    
T  29378562 acaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattccgctacg 29378501  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 44458227 - 44458303
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||| |||||| ||||||||||| |  ||||| ||||||||||||  ||||||| |||||| ||| |||||||    
T  44458227 tgctatttgacaatactttgtactaaatattgtatcgcggaacaatagcggtttgttcgaattccactatgctatag 44458303  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 46937630 - 46937564
Alignment:
Q  139 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||| ||||||||||||||||||    
T  46937630 ctatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattccgcta 46937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 1880082 - 1880137
Alignment:
Q  138 gctatttaacaatattttgtactaaaagagtatcacggaacaatagcaatttgttc 193  Q
    ||||||| |||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  1880082 gctatttgacaacattttgtactaatagagtatcacataacaatagcaatttgttc 1880137  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 7347754 - 7347687
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    ||||||| |||||||||||||||||| || ||||  |  |||||||||||||||||||||||| ||||    
T  7347754 gctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgcta 7347687  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 37143294 - 37143369
Alignment:
Q  138 gctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||  ||||||||||||||||| || |||||||| || ||||| |||||||||||| ||| ||| |||||||    
T  37143294 gctatttggcaatattttgtactaaatagtgtatcacgcaataatagtaatttgttcaaagtccactatgctatag 37143369  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 37129125 - 37129079
Alignment:
Q  171 cacggaacaatagcaatttgttcaaattccgctacgctatagagctg 217  Q
    |||||||||||||  |||||||||||||| |||||||||||| ||||    
T  37129125 cacggaacaatagtgatttgttcaaattctgctacgctatagcgctg 37129079  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 21869925 - 21869849
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||| |||| ||||||||||||| || ||||||||||||||||   |||||||| ||||| ||||||||||||    
T  21869925 tgctatttgacaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctacgctatag 21869849  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 7180705 - 7180769
Alignment:
Q  140 tatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgcta 204  Q
    |||||||||||| ||||||||||| || ||||||| ||||||||||||||| ||| ||||||||||    
T  7180705 tatttaacaatactttgtactaaatagtgtatcacagaacaatagcaatttattc-aattccgcta 7180769  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 10011954 - 10011991
Alignment:
Q  175 gaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  10011954 gaacaatagcgatttgttcaaattctgctacgctatag 10011991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 31322677 - 31322632
Alignment:
Q  167 gtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    ||||||| ||| |||| ||||||||||||||||| |||||||||||    
T  31322677 gtatcacagaataataacaatttgttcaaattccactacgctatag 31322632  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 2732998 - 2732922
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||||||| |||| ||||||||||||| ||  |||| |  ||||||||| ||||||||||||| | |||||||||||    
T  2732998 tgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 2732922  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 9163816 - 9163756
Alignment:
Q  139 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaatt 198  Q
    |||||| |||| ||||||||||||| || |||| ||||||||||||  |||||||||||||    
T  9163816 ctatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatt 9163756  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21891036 - 21891000
Alignment:
Q  174 ggaacaatagcaatttgttcaaattccgctacgctat 210  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  21891036 ggaacaatagcaatttgttgaaattctgctacgctat 21891000  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 25100488 - 25100444
Alignment:
Q  168 tatcacggaacaatagcaatttgttcaaattccgctacgctatag 212  Q
    |||| |||||||||||||||||||||||||||  | |||||||||    
T  25100488 tatcgcggaacaatagcaatttgttcaaattctacaacgctatag 25100444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 29165893 - 29165841
Alignment:
Q  149 atattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattcc 200  Q
    |||||||||| |||| ||||||||  ||||||||| |||||||||||||||||    
T  29165893 atattttgtattaaatagagtatctaggaacaataacaatttgttcaaattcc 29165841  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 34156718 - 34156643
Alignment:
Q  137 tgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgctata 211  Q
    ||||||||||||| |||||| |||||| || |||||||||| ||| ||| ||| |||||||||| |||||||||||    
T  34156718 tgctatttaacaacattttgcactaaatagcgtatcacggagcaaaagcgattagttcaaattctgctacgctata 34156643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 37056435 - 37056370
Alignment:
Q  131 aataaatgctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaa 195  Q
    ||||| |||||||| |||| |||| |||||||| || ||| |||||||||||||||||||||||||    
T  37056435 aataactgctatttgacaacatttcgtactaaacagcgtaccacggaacaatagcaatttgttcaa 37056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 8928409 - 8928469
Alignment:
Q  148 aatattttgtactaaa-agagtatcacggaacaatagcaatttgttcaaattccgctacgc 207  Q
    |||||||||||||||| || ||||||  |||||||||| |||||||||||| |||||||||    
T  8928409 aatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaatcccgctacgc 8928469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 9130993 - 9130957
Alignment:
Q  164 agagtatcacggaacaatagcaatttgttcaaattcc 200  Q
    |||||||||| ||||||||||||||||||||||||||    
T  9130993 agagtatcacagaacaatagcaatttgttcaaattcc 9130957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 18839176 - 18839231
Alignment:
Q  167 gtatcacggaacaatagcaatttgttcaaattccgctacgctatagagctggtata 222  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||| |||| ||||    
T  18839176 gtatcacggaacaatagctatttgttcaaatatcactacgctatagtgctgctata 18839231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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